Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq15364 87.8 8e-13 >seq15364 Length=4951 Score = 87.8 bits (96), Expect = 8e-13 Identities = 201/298 (67%), Gaps = 10/298 (3%) Strand=Plus/Plus Query 65090 GTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGA 65149 || ||||| |||||| | ||| |||||||| | |||||| |||| ||||| | Sbjct 2492 GTACCAAATTGACCAATAGGCTACAATAAATTGAGATTGTTACTTCCAACAAAATCTTAT 2551 Query 65150 GCCATTCCGATAATTGCTGCATTT--AAACTCGCTTCACCGTGATGATATCCTGAATGTT 65207 ||||| ||||| | ||||| ||||| ||||||||||||||| ||| || | Sbjct 2552 GCCATATTTATAATAGT--CATTTGCAAACTTATTTCACCGTGATGATAAGCTGTGTGCT 2609 Query 65208 CAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAAATG 65267 | | | |||||| |||| |||||||| ||||| | | |||| || | ||||| | Sbjct 2610 CTGCAATATATCCTGACAATTATGCAACTTTAATTTCAGCTTTTAATTTTCTCTTAAA-G 2668 Query 65268 CA---GAATACAATATTTTCCGTAAACTAATTTTCAATCCATCCATTAAATTAGGAATGC 65324 || |||| || ||||||| | ||| | || | |||||||| | | || || Sbjct 2669 CAAGCGAAT--AAGATTTTCCTTTAACCAGGCTTGAGACCATCCATCACAGATGGTATAG 2726 Query 65325 TTCTGTCACAATCATATTTTGAGAAATGTATGAATTCTTTGTTAATAAATTCTTCATA 65382 || | |||| | |||||||||| |||| ||||| | | ||| ||| |||| Sbjct 2727 ACCTCATATTATCAGCTATTGAGAAATGAATGAGTTCTTGATCGACAAACTCTGCATA 2784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235615492763700