Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq22165 114 1e-20 seq14466 96.9 4e-15 seq1053 84.2 2e-11 >seq22165 Length=1746 Score = 114 bits (126), Expect = 1e-20 Identities = 353/542 (65%), Gaps = 8/542 (1%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| ||| | ||| | | | |||||| || ||||| || ||||||||| || Sbjct 1130 TGTACAAGGACCAGATGGCTGCTTTCTGGACCTCTGAGGAAATCGACCTCGCCACTGATG 1071 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | || |||||||| | |||||| || ||||| || || |||||| ||||| || | Sbjct 1070 TTAAAGATTGGGAGAGACTCAATGACAACGAGAGACACTTTATCAAGCACGTCCTTGCTT 1011 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 ||||||| || || ||||| || | || || | | | || || | | || Sbjct 1010 TCTTCGCTGCCTCAGACGGAATCGTCAACGAGAACCTCGCCCAGAGATTCTGTACTGAAA 951 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACT 59832 |||| || | || || || | ||||| | | || | | | ||| || |||| Sbjct 950 TCCAAGTTCCAGAAGCACGCTGTTTCTATGGCTTCCAAATGATGATGGAGAACATTCACT 891 Query 59833 CCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTC 59892 | ||||| ||||| | | ||||| | | ||| || || | ||||||| | Sbjct 890 CAGAGACTTACTCAGTACTCATCGACACCCTCATCAGTGACCCACACGAGAAGGAGTTCC 831 Query 59893 TGTTCCGTGCCAT-AGAGACGTCCCCCGCAGTTA-AACAAAAA--GCAGAATGGGCCATG 59948 | ||| ||||| | || |||| |||| ||| || | || ||||||||||| Sbjct 830 TCTTCAAAGCCATCACTAACATCCC----AGTTGTAACTAAGAAGGCTGAATGGGCCATT 775 Query 59949 CAGTGGATGAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAA 60008 ||||||| || | || || || | | || || ||||| || | | || Sbjct 774 AAGTGGATTGGTGAGAGCGCTAGCTTCGCTGAGAGACTAATTGCTTTCGCTGCCATCGAG 715 Query 60009 GGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATG 60068 || ||||||||||| || || ||||| | || |||||||| || ||||||||||||||| Sbjct 714 GGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTCTGGCTTAAGAAGCGTGGCCTCATG 655 Query 60069 CCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTT 60128 || || || | ||||| || ||||| ||||| | ||||| || | ||| || ||| Sbjct 654 CCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGAGACGAAGGTATGCATACTGACTTT 595 Query 60129 GC 60130 || Sbjct 594 GC 593 >seq14466 Length=3412 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 19419 TCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCA 19478 |||| ||||||||| | || ||||| | || || || || ||| |||| || || |||| Sbjct 1458 TCGTGCCAATGCTCAGAGTTTTCAATGAGACTGCTAGATATGTCGACCAAGGAGGTGGCA 1517 Query 19479 AACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCC 19538 | | ||||| || ||||| || ||| | || ||||||||||| || ||| | ||||||| Sbjct 1518 AGAGAAAGGGTTCATTCGCTATATACTTGGAACCATGGCACGCAGATGTCTTCGATTTCC 1577 Query 19539 TCGAACTGCGCCTGAACCAGGGTGACGAGGA--GATGCGCTGTCGCGACCTCTTCACGGC 19596 | |||| | ||| || ||| | ||||| | | || | ||| | ||| || Sbjct 1578 TTCAACTAAGAAAGAATCACGGTAAAGAGGAACAAAGAGC--AAGAGACTTGTTCTTCGC 1635 Query 19597 CTTGTGGATTCCGGACCTATTCATGGAGA 19625 | |||||||| ||| |||||||| ||| Sbjct 1636 TCTCTGGATTCCAGACTTATTCATGAAGA 1664 >seq1053 Length=3228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 170/247 (69%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 19436 GTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTC 19495 |||||||| |||| || || |||||| | | || || || ||| | ||||| | ||| Sbjct 1233 GTCTTCAATGACACCGCAAGATACGTCGATTAAGGTGGTGGAAAAAGAAAGGGAGCTTTC 1292 Query 19496 GCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAAC 19555 || |||| | || ||||||||||| || || || ||||| |||| | ||| Sbjct 1293 GCTGTCTATGTTGAACCATGGCACGCTGATATCTACGACTTCCTTTAACTTAGAAAGAAT 1352 Query 19556 CAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCT 19614 || ||| | || |||| | | | ||||| ||| ||| ||| |||| ||| || || Sbjct 1353 CACGGTAAGGAAGAGAATAGAGCTAGAGACCTTTTCTACGCTCTT-TGGACTCCAGATCT 1411 Query 19615 ATTCATGGAGAAG-GTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCC 19673 ||||| |||||| ||||| | ||||| ||| |||||||| || | ||||||| Sbjct 1412 TTTCAT-GAGAAGAGTTGAAGCAAATGAAGATTGGACTCTGATGTGTCCAAATGAATGCC 1470 Query 19674 CTGGCCT 19680 | || || Sbjct 1471 CAGGACT 1477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548370815375520