Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq22165 131 2e-25 >seq22165 Length=1746 Score = 131 bits (144), Expect = 2e-25 Identities = 372/570 (65%), Gaps = 4/570 (1%) Strand=Plus/Plus Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| || |||| ||||| ||||| || | ||||| || || | || || Sbjct 593 GCAAAGTCAGTATGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCT 652 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| || ||||||||||| | ||| ||||| | |||||||| || |||||||||| Sbjct 653 GGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATG 712 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAA 74930 || |||| || || || | || | | ||||| || | ||||| Sbjct 713 CCCTCGATGGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCAC 772 Query 74931 GTCTGAGCCCATTCAGC--TTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGA 74988 | ||||||||||| | || ||| || | |||| || ||| |||| ||||| Sbjct 773 TTAATGGCCCATTCAGCCTTCTTAGTT--ACAACTGGGATGTTAGTGATGGCTTTGAAGA 830 Query 74989 GGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCG 75048 || ||||||| | || || ||| ||| |||| || | | |||||| ||||| | Sbjct 831 GGAACTCCTTCTCGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTG 890 Query 75049 AATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTA 75108 | ||||| ||| | | | ||| | | |||||| | || || |||| || || | Sbjct 891 AGTGAATGTTCTCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGA 950 Query 75109 CATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAA 75168 || | | || || | ||| ||||| ||||||| ||||| ||||| ||||| | Sbjct 951 TTTCAGTACAGAATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAGA 1010 Query 75169 AAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCA 75228 |||| || || ||||||||||| | ||| | |||| ||||| | |||||||| || | Sbjct 1011 AAGCAAGGACGTGCTTGATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAATCTTTAA 1070 Query 75229 GGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACA 75288 || || | || || ||||| ||||||||| | ||| | ||||||| Sbjct 1071 CATCAGTGGCGAGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTGGTCCTTGTACA 1130 Query 75289 AAGACCACAAGTCAGGGTAATTGATTGGAA 75318 ||| | ||| ||| |||||||||| Sbjct 1131 TCTTCCAGATGTCGTTGTACTTGATTGGAA 1160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547062382788400