Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq14202 91.5 9e-14 seq18203 89.7 3e-13 >seq14202 Length=1113 Score = 91.5 bits (100), Expect = 9e-14 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TG 34537 || |||||||| | | ||||| |||||||| ||||||||| ||||| || || | Sbjct 880 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTC 821 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||||| | || |||||||||||||||||||||| || || | | ||||| || || | Sbjct 820 AAAGTTCT-GC-CGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTG 763 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | || |||||||| |||| || | ||| || | || ||||| || Sbjct 762 GAATACCTTCCTTGTCCTGGATC-TTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCG 704 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| || || || |||||||| || || ||||| || |||| ||| Sbjct 703 ACGTCCAAAGTGATAGTCTTACCGGTCAAGGTCTTCACGAAGATCTACAT 654 >seq18203 Length=1365 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | ||||| |||||||| ||||||||| ||||| || || || Sbjct 1088 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGAC 1029 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||||||||| ||||| || || || | | ||||| || || || Sbjct 1028 AAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGG 969 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||| || | || ||| | ||| |||||| ||| || Sbjct 968 ATACCTTCCTTGTCCTAGATC-TTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAAC 910 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| | || || || || || ||||| Sbjct 909 ATCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 862 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| ||||| || || || ||||| || |||||||| |||| | |||||| Sbjct 842 ACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAAAGAGTTCTGCCATCTTCA 783 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||| || ||||| || || | | ||||| || || || | || ||||||||| | Sbjct 782 AGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCTTGG 723 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| |||| || || | ||| || ||| ||| || |||| ||| || || || Sbjct 722 ATC-TTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGATGGTCTT 664 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || || || || ||||| Sbjct 663 TCCGGTAAGGGTCTTGACGAAGATTTGCAT 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314643456344714