Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq14202 134 1e-26 seq533 118 9e-22 seq18203 114 1e-20 >seq14202 Length=1113 Score = 134 bits (148), Expect = 1e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||| | || || || || ||||| || |||||| | || |||||||| || || || || Sbjct 197 CATGTAAATTTTCGTTAAGACTCTCACTGGCAAGACCATCACTCTTGATGTTGAGCCATC 256 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | ||||| || || ||||||||||| || || ||||||||||| Sbjct 257 AGATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCCGATCA 316 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||| | | || | ||| || || || ||||||||| | ||| | ||||| ||||| Sbjct 317 ACAGAGACTCATTTTCGCTGGAAAGCAGTTGGAAGACGGCAGAACCCTCTCCGACTACAA 376 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||| || |||||||| ||| | || ||||| ||| Sbjct 377 CATCCAGAAGGAGTCAACCCTTCACTTGGTCTTG 410 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| || || || || ||||||| ||| |||| ||| | || || ||||| ||| Sbjct 654 ATGTAGATCTTCGTGAAGACCTTGACCGGTAAGACTATCACTTTGGACGTCGAACCATCC 713 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| || || || ||||| ||||| || |||||||||||| Sbjct 714 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCCGATCAA 773 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||| |||||| | |||||| | || | ||| |||||| Sbjct 774 CAAAGACTCATCTTCGCCGGTAAACAACTTGAAGACGGCAGAACTTTGAGCGACTACAAC 833 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||||||||| || | || ||||| Sbjct 834 ATCCAAAAGGAGTCTACTCTCCACTTGGT 862 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| ||| | || || ||||| || || || || Sbjct 426 ATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCCTTGACGTCGAGCCATCA 485 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| || ||||| |||||||| || |||||||||||| Sbjct 486 GACACCATTGAAAACGTTAAGGCAAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAA 545 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||||||||| ||| | ||||| | ||| |||| || ||||| Sbjct 546 CAAAGACTTATCTTCGCCGGCAAGCAACTTGAAGATGGAAGAACCCTTTCAGACTACAAT 605 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 |||||||| || || ||| | || |||||| Sbjct 606 ATTCAAAAAGAATCTACCCTTCACTTGGTT 635 >seq533 Length=4588 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| || || || ||| ||||||| ||| ||||||||||||| || || || || Sbjct 4443 ATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCT 4384 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||||||||||||||| || || || |||||| Sbjct 4383 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAA 4324 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || | ||||||||| | ||| | || ||||||||| Sbjct 4323 CAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAAC 4264 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || ||||| || || || | || ||||| ||| Sbjct 4263 ATCCAAAAAGAATCAACTCTCCACTTGGTCTTG 4231 >seq18203 Length=1365 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || || || |||||| | || ||| | || || || || || Sbjct 177 CATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCCTC 236 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || |||||||| ||||| || ||||||||||| Sbjct 237 TGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCA 296 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| ||||| ||| | |||||| | ||| | ||||| ||||| Sbjct 297 ACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCTTGTCCGACTACAA 356 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||| || ||||| || ||| | || |||||| Sbjct 357 CATCCAGAAGGAATCAACCCTTCACTTGGTT 387 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| ||| | || || | || || || || || Sbjct 634 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 693 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| ||| || |||||||| ||||| || |||||||||||| Sbjct 694 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 753 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||| || ||| | ||||| | || |||| || |||||| Sbjct 754 CAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAAC 813 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || | |||||||| | | ||| | ||||| || Sbjct 814 ATCCAGAAAGAATCTACTCTTCATTTGGTCCTCAGATTGAGAGGTGGTAT 863 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| ||| | || || || || || || || || Sbjct 862 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA 921 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || | ||||| ||||| || |||||||||||| Sbjct 922 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 981 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| || || ||| | |||||| | ||| | ||||| |||||| Sbjct 982 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 1041 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||||||||| || | || ||||| Sbjct 1042 ATCCAAAAGGAGTCAACTCTCCACTTGGT 1070 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || ||| | || ||| | || || || || || Sbjct 406 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTTTGGACGTTGAGCCATCA 465 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || ||||| || ||||| || || ||||||||| Sbjct 466 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAA 525 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || || ||| | ||||| | ||| || || |||||| Sbjct 526 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAAC 585 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | || ||||| | | ||| | ||||| || Sbjct 586 ATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGTAT 635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434796307532160