Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq4291 91.5 1e-13 >seq4291 Length=4287 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 118468 AGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCA 118527 ||||| |||| ||||| |||| ||||||||||| || | | ||| ||||| || || Sbjct 1538 AGTGGTTCAACATGATTTTTATATACATGAGCATCACCTAATACATGAATGAACTCTCCT 1479 Query 118528 GGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTA 118587 | | || || || |||| |||| | || ||||| || || || | || Sbjct 1478 CTCTTCAATCCGCACACTTGTGCAAGCATGCAGGTTAACAATGAATAACTCGCAATGTTG 1419 Query 118588 AAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCG 118647 ||||||| ||| |||||||| || ||||| || |||| |||||| || |||| || Sbjct 1418 AAAGGAATACCAAGACCCATATCACAAGATCTTTGATACATTTGGCAGGAAAGCTTTCCA 1359 Query 118648 TTTGC---AACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 | || ||||||||| | | || ||||| || ||||| ||| ||||| Sbjct 1358 TCAGCAGAAACATAAAATTAAGCTAAAATGTGGCAGGGAGGAAGAGCCATG 1308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414363354850312