Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq18203 179 9e-40 seq14202 159 8e-34 seq533 152 1e-31 >seq18203 Length=1365 Score = 179 bits (198), Expect = 9e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| ||||| | ||| ||||| ||||| ||||||||||| || || | | ||| || Sbjct 1080 AAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCT 1021 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 || ||||| || ||||| || ||||||||||| | |||||| || || || | ||||| Sbjct 1020 GCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTC 961 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 |||||||| |||||| ||||||||||| |||||||| || ||||| ||||| || Sbjct 960 CTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGAGGGT 901 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| ||||| ||||| || || | ||||| Sbjct 900 GATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 862 Score = 172 bits (190), Expect = 1e-37 Identities = 180/235 (77%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | |||||| || || || || |||||||| || || | | ||| ||| Sbjct 395 AGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTTCTT 336 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| || |||||||| |||||||| || | |||||| || || || | ||||||| Sbjct 335 CCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCC 276 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| |||||||| || || |||||||||||||||||| ||||| || | |||| Sbjct 275 TTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTG 216 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT-TTTATGGTTACTTGAT 211130 || ||||| || ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 215 ATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTTATTTTTGGTTGAT 161 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | |||||| || ||||| ||||||||||| || || |||||| ||||| Sbjct 621 TCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCC 562 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| || ||||| || || || || || | |||||| || || |||| |||||||| Sbjct 561 ATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 502 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || |||||||| || |||||||| || ||||| || ||||| || | |||||| Sbjct 501 ATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACGTCCAAAGTGAT 442 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| ||||| || || | ||||| Sbjct 441 GGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 406 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | |||||||| || ||||| |||||||| || || | ||| || || || Sbjct 849 TCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAAAGAGTTCTGCC 790 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| || ||||| || |||||||| || | |||||| || || || | |||||||| Sbjct 789 ATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTT 730 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||||||| || || || || ||||| || || || || || | ||||| Sbjct 729 GTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGAT 670 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || ||||| || || | ||||| Sbjct 669 GGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 634 >seq14202 Length=1113 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | |||||| || || |||||||| || || || || | |||||| ||||| Sbjct 641 TCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAAAGGGTTCTTCC 582 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| || |||||||| ||||||||||| | |||||| || || || | ||||| || Sbjct 581 ATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTT 522 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || ||||||||| || |||||||| |||||||| || || || || || ||||| Sbjct 521 ATCTTGGATCTTTGCCTTAACGTTTTCAATGGTGTCTGATGGCTCGACGTCAAGGGTGAT 462 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || ||||| || || | ||||| Sbjct 461 GGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 426 Score = 150 bits (166), Expect = 4e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCC 210954 |||||| ||||| | ||| ||||| ||||| ||||||||||| || || | ||| | || Sbjct 872 AAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAAGTTC- 814 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 | || ||||| || || || || |||||||| || | |||||| || || |||| |||| Sbjct 813 TGCCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGAATACCTT 754 Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG 211074 |||||||||||||||| ||| || || ||||||||||| || ||| || || | || Sbjct 753 CCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCGACGTCCAAAG 694 Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| ||||| || || | ||||| || || | || ||| Sbjct 693 TGATAGTCTTACCGGTCAAGGTCTTCACGAAGATCTACAT 654 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| | ||| | |||||| || ||||| || |||||||| || || | ||||| || Sbjct 415 AGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCTG 356 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||||| |||||| || ||||| || || | ||||| || || || | ||| || Sbjct 355 CCGTCTTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGTTGATCGGGTGGGATTCCCTCT 296 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| |||||||| || || ||||| ||||| || || ||||| || |||||| Sbjct 295 TTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGCTCAACATCAAGAGTG 236 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| || ||||||||||| || || Sbjct 235 ATGGTCTTGCCAGTGAGAGTCTTAACGAA 207 >seq533 Length=4588 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | ||| | ||| ||||| || |||||||||||||| ||||| | | ||| || Sbjct 4225 AAGTCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCT 4284 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 || ||||||| || ||| || || ||||| || | ||||| ||||| |||| ||||| Sbjct 4285 GCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTC 4344 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| || ||||| || |||||||||||||| ||||| || || || ||||| Sbjct 4345 TTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGT 4404 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || | |||||| || || | || |||||| Sbjct 4405 AATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTACATTTT 4446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158818461981170