Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq18203 185 2e-41 seq14202 181 3e-40 seq533 167 6e-36 seq8691 95.1 3e-14 seq14466 87.8 4e-12 >seq18203 Length=1365 Score = 185 bits (204), Expect = 2e-41 Identities = 176/224 (79%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| || || | ||| || || ||||| || |||| ||||| |||| ||| ||||| Sbjct 395 AGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTTCTT 336 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| || ||||| ||||||||||| |||| |||||| ||||| || || |||||| Sbjct 335 CCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCC 276 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| ||| ||| |||||||||||| |||| || ||||| || ||| Sbjct 275 TTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTG 216 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT-TTTAT 225718 || |||||||| || | || || | ||| | |||||| ||||| Sbjct 215 ATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTTAT 172 Score = 179 bits (198), Expect = 9e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||| ||||| | ||||||||| || || ||||||| ||||| |||| ||| ||||| Sbjct 1080 AAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCT 1021 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || ||||| || ||||| |||||||||||||||| |||||| ||||| || |||||||| Sbjct 1020 GCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTC 961 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||| | |||||| |||||| ||| ||||||||||| | || || || | || Sbjct 960 CTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGAGGGT 901 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||| || || | || || | ||| | |||||| Sbjct 900 GATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 862 Score = 168 bits (186), Expect = 2e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||| | || ||||| |||||||| |||| ||||| || | | |||||| || Sbjct 849 TCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAAAGAGTTCTGCC 790 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| || ||||| || |||||||| |||| |||||| ||||| || ||||||||||| Sbjct 789 ATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTT 730 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||||| ||| ||| || ||||| ||||| | || ||||| || ||||| Sbjct 729 GTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGAT 670 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | || || | ||| | |||||| Sbjct 669 GGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 634 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||| | ||| || || || || ||||||| ||||| || | ||||| || Sbjct 621 TCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCC 562 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| || ||||| ||||| || || |||| |||||| ||||| |||||||||||||| Sbjct 561 ATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 502 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| ||| || ||| || |||||||| | || ||||| || ||||| Sbjct 501 ATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACGTCCAAAGTGAT 442 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | || || | ||| | |||||| Sbjct 441 GGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 406 >seq14202 Length=1113 Score = 181 bits (200), Expect = 3e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||| ||||| | ||||||||| || || ||||||| ||||| ||| ||||||||| Sbjct 872 AAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCT 813 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || ||||| || || || || |||||||| |||| |||||| ||||| ||||||||||| Sbjct 812 GCCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGAATACCTTC 753 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||| |||||||| || ||| ||||||||||| || | ||| ||||| || || Sbjct 752 CTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCGACGTCCAAAGT 693 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 ||| ||||| || ||||| || || | ||| Sbjct 692 GATAGTCTTACCGGTCAAGGTCTTCACGAA 663 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||| || || ||||||||||| | |||||| || | | ||||| || Sbjct 641 TCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAAAGGGTTCTTCC 582 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| || ||||| || ||||||||||||| |||||| ||||| || |||||||| || Sbjct 581 ATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTT 522 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| || ||| ||||||||||| | || ||||| | ||||| Sbjct 521 ATCTTGGATCTTTGCCTTAACGTTTTCAATGGTGTCTGATGGCTCGACGTCAAGGGTGAT 462 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | || || | ||| | |||||| Sbjct 461 GGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 426 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||| ||| | ||| || || || || || |||| ||||| |||| | ||||| Sbjct 415 AGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCTG 356 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| | |||||| |||||||| || |||| ||||| ||||| || || || || Sbjct 355 CCGTCTTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGTTGATCGGGTGGGATTCCCTCT 296 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| ||| ||| ||| ||||| ||||| | || || || | ||| Sbjct 295 TTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGCTCAACATCAAGAGTG 236 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || |||||||| || | ||| || | ||| | || ||| || Sbjct 235 ATGGTCTTGCCAGTGAGAGTCTTAACGAAAATTTACATGTT 195 >seq533 Length=4588 Score = 167 bits (184), Expect = 6e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||||| ||| | ||||||||| ||||||||||||| |||||||| | ||| ||||| Sbjct 4225 AAGTCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCT 4284 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || ||||| | || ||| ||||| ||||| |||| ||||| || || ||||||||||| Sbjct 4285 GCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTC 4344 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||||| ||||| ||| || ||||||||| || || | || || || | || Sbjct 4345 TTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGT 4404 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| || |||||||| || | ||| | | |||||| Sbjct 4405 AATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTACATTTT 4446 >seq8691 Length=2406 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| ||||| ||||| || |||||||| ||||| |||||||| Sbjct 799 GAAGATTTGTCCATCAGTAATGGAGATGACATTAGTTGGGATATAGGCAGACACATCACC 858 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||| || || | | || | ||| || ||||| |||||||| Sbjct 859 AGCTTGGGTCTCAATGATGGGGAGGGCAGTGAGTGAACCACCACC 903 >seq14466 Length=3412 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 193583 CCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGTA 193642 |||||||| ||||||||||| |||| |||| | |||||| ||| ||||| ||| Sbjct 1813 CCAAAGTTTTTGAGCTTTCATTGTCTTTCTACCAATTCCTTATTGCTCATACTTAGTGTA 1754 Query 193643 CAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAAA 193702 |||| | || || |||| || | | ||| ||| || ||||| || ||||| || Sbjct 1753 CAGTGCTTCGAATTCTTAACCATGAACGTCGAAGAGGCCCTTGGCTTCGTTGGGGCAGAA 1694 Query 193703 GAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGAAGAGGTCAGATGTCCAAATGGC 193762 || |||| ||||| ||| || || ||||||||||| | ||| | |||| | || Sbjct 1693 AAGTGTCCAGTCTCCGTCAGCTTGGACTCTCTTCATGAATAAGTCTGGAATCCAGAGAGC 1634 Query 193763 GTAGAAAAGTTGTCTCGCTTTTT 193785 | |||| | | ||| ||| ||| Sbjct 1633 GAAGAACAAGTCTCTTGCTCTTT 1611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192188057345852