Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1053 226 4e-54 seq22165 140 5e-28 >seq1053 Length=3228 Score = 226 bits (250), Expect = 4e-54 Identities = 507/756 (67%), Gaps = 18/756 (2%) Strand=Plus/Minus Query 77495 AAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAAT 77554 || ||||||||| ||||| | || ||||| ||||| ||||| ||||| ||| ||| | Sbjct 1940 AAGGGCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATT 1881 Query 77555 TTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAAC 77614 | ||||||| |||| |||||| ||||| | |||||||||||||| ||||| || || Sbjct 1880 TCTAGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAAT 1821 Query 77615 TACTTTAACCACGTCCTTTAGTTTAAGAAAATCA-AATCTTCCAT---CTATAACA--AA 77668 | || ||||| | || || | ||||| | |||| | || ||||| || Sbjct 1820 TCTCTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAA 1761 Query 77669 CATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTG 77728 | || ||||| ||||| ||||| ||||| || || || |||| | ||| | ||| Sbjct 1760 TCTATTTAAAGCAATAGAAGCTAGGTTACAGACAGCCACTTCATCGGGACTGGTAAATTC 1701 Query 77729 TATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTT 77788 | ||||| || || || ||| || || || ||||| ||||||| | ||| || Sbjct 1700 GACGATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTAGATTT 1641 Query 77789 TTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGAT 77848 | ||||||| | || || || || ||| | ||||| || || || | || || || || Sbjct 1640 TCTATTGCAAGCATCTTTGTAGAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTAT 1581 Query 77849 AATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCG-CCTCTCTC-----T 77902 || | ||||| |||||| | | | || |||| || ||||| | | Sbjct 1580 GATTTAACCCCAGAGCCATCTAGCCT---TAACAGTTTTG---CGACCTCTACCAGTGGT 1527 Query 77903 TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 ||||| | | || || ||||| || || ||||| | | | ||| ||||| Sbjct 1526 CTCATACTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCA 1467 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATC 78022 ||||||||| ||||||| | ||| || ||| | | | ||||| | |||| || ||||| Sbjct 1466 TTCATTTGGACACATCAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATC 1407 Query 78023 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTT 78082 || |||| ||||| || || |||| | ||||| ||||| || || |||||| Sbjct 1406 TGGAGTCCAAAGAGCGTAGAAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTT 1347 Query 78083 TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAAC 78142 | |||| | || || || ||||||| ||||||||||| | ||| | || | | | Sbjct 1346 TCTAAGTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGC 1287 Query 78143 TCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAA 78202 ||| || ||| ||| || | ||| | ||||| ||||||| ||| | || |||| Sbjct 1286 TCCCTTTCTTTTTCCACCACCTTAATCGACGTATCTTGCGGTGTCATTGAAGACCTTCAA 1227 Query 78203 CATTGGAATAATACCGTTAGATGTTCCATTTGTTCC 78238 ||||||||| | || || || ||| ||||| || Sbjct 1226 CATTGGAATCAATCCATTTGAATATCCGTTTGTACC 1191 >seq22165 Length=1746 Score = 140 bits (154), Expect = 5e-28 Identities = 402/613 (66%), Gaps = 4/613 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| ||| ||| | |||||| ||||| ||| | || || || || |||||| Sbjct 590 CAAGCAAAGTCAGTATGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGA 649 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| || ||||| || || ||||| || |||| ||| ||||| || ||||| Sbjct 650 CCTGGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAG 709 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATC 48320 ||||| || | ||| || || || | |||||||| || | || || | ||| Sbjct 710 ATGCCCTCGATGGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATC 769 Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT-ATAGCATTAAA 48379 ||| ||||| ||||||||||| ||||| || || ||| | || || || || Sbjct 770 CACTTAATGGCCCATTCAGCCTTCTTAGTTACAACTGGGAT-GTTAGTGATGGCTTTGAA 828 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 ||| || | || || | || | | | || || || | | || | || Sbjct 829 GAGGAACTCCTTCTCGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTC 888 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 |||||||| || || || ||| || || || || ||||| | ||||||| | || Sbjct 889 TGAGTGAATGTTCTCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTG 948 Query 48500 TACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAA 48559 | || ||||| |||| | || | ||||| || || ||||| || ||||| || Sbjct 949 GATTTCAGTACAGAATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAA 1008 Query 48560 AAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATT 48619 || || | || || || ||||| | | | |||||| | | ||| | | ||| || || Sbjct 1009 GAAAGCAAGGACGTGCTTGATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAATCTTT 1068 Query 48620 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCC-TCTGCTTTTTTAT 48678 | ||| | | | || | ||| |||| ||||| || | ||| |||| | || | Sbjct 1069 AACATCAGTGGCGAGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTGGTCCTTG-T 1127 Query 48679 ACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTG 48738 |||| ||||| || || |||| | |||||| | ||||||||||| ||||| || | | Sbjct 1128 ACATCTTCCAGATGTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTTATCTT 1187 Query 48739 CAAGGATAGGTTC 48751 | || | ||| || Sbjct 1188 CGAGAAGAGGCTC 1200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694473789101120