Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq14466 226 4e-54 seq1053 192 8e-44 seq22165 127 3e-24 >seq14466 Length=3412 Score = 226 bits (250), Expect = 4e-54 Identities = 610/926 (66%), Gaps = 8/926 (1%) Strand=Plus/Minus Query 76271 AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATC 76330 |||| ||| || || || || ||||| ||||| |||| | || || | || ||| Sbjct 1995 AGAGATATGGAAGCAAGGTTGCAAACAGCTACTTCATCTGGTGAGGTGTACTCGATAATC 1936 Query 76331 TCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTA 76390 || ||| | ||| || ||||| ||||| || || | |||||||||||| |||| Sbjct 1935 TCACAGCACAAATTGGAACTTTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCTGTTG 1876 Query 76391 -CATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGA 76449 | ||| |||||||| | | | |||||||||||||| || |||||||| ||||| | Sbjct 1875 GCGTGA-TCCTTATACAACATGTATGGAGTTCCAGTTTCGATTTGTGATTCAATAATGGC 1817 Query 76450 TTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTCTT--TCATATTGT 76507 || ||| | | |||||| ||| | ||| || | ||| | || ||||| | Sbjct 1816 TTCCCAAAGTTTTTGAGCTTTCATTGTC--TTTCTACCAATTCCTTATTGCTCATACTTA 1759 Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 || || | ||| ||||| | || ||| || | || ||| || || Sbjct 1758 GTGTACAGTGCTTCGAATTCTTAACCATGAACGTCGAAGAGGCCCTTGGCTTCGTTGGGG 1699 Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627 || | | || ||| || || || | | || | ||||| || | || || ||||| Sbjct 1698 CAGAAAAGTGTCCAGTCTCCGTCAGCTTGGACTCTCTTCATGAATAAGTCTGGAATCCAG 1639 Query 76628 AGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCT 76687 ||||| | || | |||| | ||| |||| || || || ||||||| | || | Sbjct 1638 AGAGCGAAGAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTAGTTGA 1579 Query 76688 AGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGT 76747 ||||| || | | ||| | ||||||||||| | ||||| || | |||| || Sbjct 1578 AGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTATATAGCGAATGAACCCTTTCTC 1519 Query 76748 TTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATA 76807 || |||||| || || | |||||| ||||| | ||| ||||||| | |||||| | Sbjct 1518 TTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAAACTCTGAGCATTGGCACG 1459 Query 76808 ATGCCGTTAGATGT-ACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACT 76866 | ||| ||| ||| |||||| || || || ||||| ||| || | || || Sbjct 1458 AGGCCATTA-CTGTGACCATTGGTGCCCTTGATGTAACTGCCAGTAGCTCTGATGTTGTG 1400 Query 76867 AATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTC 76926 || || || || | || || || ||| || || || || | || | || || Sbjct 1399 AACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAGTGCGATGTTCTTGAGGGTATC 1340 Query 76927 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 76986 |||||| || | || || ||| |||| |||| || || || || ||||||| | Sbjct 1339 ATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTGGACATTTATGG 1280 Query 76987 ATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAG 77046 | |||||| ||||| ||||| ||||||| |||||||| |||||| | ||| | Sbjct 1279 CTTGGGAGTTCCAGCATTGAACAAAGTAGGAGTAGCATGAGTAAACCATCTGTCACTCAT 1220 Query 77047 TAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACG 77106 || ||||| |||||||| ||| || |||||| | || || ||||||| || | Sbjct 1219 GAGGTTGTAAGTTTCAATGGCTGAATCGATATCCTTCTTGTGGATACCTACAGACACTCT 1160 Query 77107 CATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTT 77166 ||||||||| ||||| |||| || || ||||| ||| | || || ||||| ||| | Sbjct 1159 CATCAACATGTGCTGTGGTCTCTCAACGATCTTAGAATTGACCTTTAATAAGTAGGATCT 1100 Query 77167 TTCCAAAGTTTTAAAACCAAAATAGT 77192 ||||| || ||||| || ||||||| Sbjct 1099 CTCCAAGGTCTTAAATCCGAAATAGT 1074 >seq1053 Length=3228 Score = 192 bits (212), Expect = 8e-44 Identities = 481/726 (66%), Gaps = 20/726 (3%) Strand=Plus/Minus Query 76094 GCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCA 76153 |||||||| | ||| | || ||||| ||||| ||||| ||||| ||| ||| || | Sbjct 1936 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATTTCTA 1877 Query 76154 GCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACT 76213 ||||| |||| ||| || ||||| |||||||||||||||| ||| |||| | | | || Sbjct 1876 GCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGA-TTCTTAGTAATTCT 1818 Query 76214 -TTAACCACGTCCTTTAGTTTGAGAAAATCAAATT------TTCCATCTATCACAAACAT 76266 || ||||| | || || | ||||| ||| || | | || ||| || | Sbjct 1817 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 1758 Query 76267 ATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTAT 76326 ||| | ||| ||||| ||||| ||||| || || || |||| | | ||| | ||| | Sbjct 1757 ATTTAAAGCAATAGAAGCTAGGTTACAGACAGCCACTTCATCGGGACTGGTAAATTCGAC 1698 Query 76327 TATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTT 76386 ||||| ||||| || ||| || ||| || || |||||||||| | ||| ||| | Sbjct 1697 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTAGATTTTCT 1638 Query 76387 GTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 || || | || || || || | | | ||||| ||||| || | || || || || || Sbjct 1637 ATTGCAAGCATCTTTGTAGAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 1578 Query 76447 AGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCG-CTTCTCTC-----TTTC 76500 | ||||| |||||| | | | || |||| || | ||| | | || Sbjct 1577 TTAACCCCAGAGCCATCTAGCCT---TAACAGTTTTG---CGACCTCTACCAGTGGTCTC 1524 Query 76501 ATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTC 76560 ||| | | || | ||||| || || ||||| | | | || || ||||| Sbjct 1523 ATACTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTC 1464 Query 76561 ATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGG 76620 ||| |||||||||| | ||| || ||| | | | ||| | | |||| || ||||| || Sbjct 1463 ATTTGGACACATCAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGG 1404 Query 76621 TATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTT 76680 |||| ||||| || || |||| | |||| ||||| || || ||||||| | Sbjct 1403 AGTCCAAAGAGCGTAGAAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCT 1344 Query 76681 AAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACC 76740 ||| | ||||| || ||||||| ||||||||||| | ||| | || | | | || Sbjct 1343 AAGTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCC 1284 Query 76741 CGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACAT 76800 | || ||| ||| || | ||| | ||||| || |||| ||| | || ||||||| Sbjct 1283 CTTTCTTTTTCCACCACCTTAATCGACGTATCTTGCGGTGTCATTGAAGACCTTCAACAT 1224 Query 76801 TGGAAT 76806 |||||| Sbjct 1223 TGGAAT 1218 >seq22165 Length=1746 Score = 127 bits (140), Expect = 3e-24 Identities = 399/613 (65%), Gaps = 4/613 (1%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| ||| ||| | ||||| ||||| ||| | || || || || ||||| Sbjct 590 CAAGCAAAGTCAGTATGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGA 649 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || ||||| || |||||||| || ||||| || || | ||| ||||| || ||||| Sbjct 650 CCTGGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAG 709 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATC 46809 ||||| || | || ||||| || | |||||||| || | || || | | |||| Sbjct 710 ATGCCCTCGATGGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATC 769 Query 46810 CACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT-ATAGCATTAAA 46868 ||| | ||||| |||||||| || ||||| || || ||| | || || || || Sbjct 770 CACTTAATGGCCCATTCAGCCTTCTTAGTTACAACTGGGAT-GTTAGTGATGGCTTTGAA 828 Query 46869 GAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTC 46928 ||| || | || || | || | | || || || | | || | || Sbjct 829 GAGGAACTCCTTCTCGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTC 888 Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988 ||| |||||||| || || ||| || || || || ||||| | |||||| | || || Sbjct 889 TGAGTGAATGTTCTCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTG 948 Query 46989 TACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAA 47048 | || ||||| |||| | | | ||||| || || ||||| || ||||| || Sbjct 949 GATTTCAGTACAGAATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAA 1008 Query 47049 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATT 47108 || || | || || || ||||| | | | || | | | | ||| | | ||| || || Sbjct 1009 GAAAGCAAGGACGTGCTTGATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAATCTTT 1068 Query 47109 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCC-TCTGCTTTTTTAT 47167 | ||| | | | || | ||| |||| |||||||| | ||| |||| | || | Sbjct 1069 AACATCAGTGGCGAGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTGGTCCTTG-T 1127 Query 47168 ACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTG 47227 |||| ||||| || || || | ||| |||| ||||||||||| ||||| || | | Sbjct 1128 ACATCTTCCAGATGTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTTATCTT 1187 Query 47228 CAAGTATAGGTTC 47240 | || | ||| || Sbjct 1188 CGAGAAGAGGCTC 1200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712734261490560