Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq18203 149 1e-30 seq14202 141 2e-28 seq533 129 1e-24 >seq18203 Length=1365 Score = 149 bits (164), Expect = 1e-30 Identities = 165/218 (76%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||||||||| | |||||||||||| ||||| ||||||||||| || | | |||||| || Sbjct 849 TCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAAAGAGTTCTGCC 790 Query 151949 ATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||| || ||||| ||||||||||| || || || || || | | ||| |||||| Sbjct 789 ATCTTCAAGTTGCTTT--CCGGCGAAGATGAGTCTTTGTTGATCGGGTGGGATACCTTCC 732 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || ||| |||||| |||| | | | |||||| ||| || || | || Sbjct 731 TTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTG 672 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || ||||| ||||||| ||||| Sbjct 671 ATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 634 Score = 134 bits (148), Expect = 3e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||||||||| || | ||||| || || || || ||||||||||| |||| || ||| Sbjct 398 CTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTT 339 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||||| || || || |||||||| || || || || || | | ||||||| Sbjct 338 CTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCT 279 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || |||||| | || | | |||| || ||| || || | | Sbjct 278 TCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAA 219 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| ||||| ||||| ||||||| ||||| || Sbjct 218 GTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTT 175 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||||||||| | || ||||| ||||| |||||||||||||| |||| || ||| Sbjct 1082 CTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTT 1023 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||||| || || || ||||||||||| || || || || | | ||| ||| Sbjct 1022 CTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCT 963 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || | || || || || | || | | ||||||| ||| || || || Sbjct 962 TCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGAGG 903 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| ||||| ||||||| ||||| Sbjct 902 GTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 862 Score = 113 bits (124), Expect = 1e-19 Identities = 159/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAG-TTCTCC 151947 ||||||||| | ||||| || ||||| |||||||||||||| || |||| | |||| | Sbjct 621 TCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCA-CTAAGGGTTCTTC 563 Query 151948 CATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||||| || ||||| || || || || || || || || || | | || ||||| Sbjct 562 CATCTTCAAGTTGCTTT--CCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTC 505 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || ||||| | || | ||||||| ||| || || | ||| Sbjct 504 CTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACGTCCAAAGT 445 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||||||||||| ||||| Sbjct 444 GATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 406 >seq14202 Length=1113 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||||||||| | || ||||||||||| |||||||||||||| ||| |||||| Sbjct 874 CTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAAGTT 815 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||||| || ||| ||||||||||| || || || || || | | || ||| Sbjct 814 CTGCCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGAATACCT 755 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || ||||||| |||| | | |||| || || || || | | Sbjct 754 TCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCGACGTCCAAA 695 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || | ||||||||||||| || ||| Sbjct 694 GTGATAGTCTTACCGGTCAAGGTCTTCACGAAGATCTACAT 654 Score = 123 bits (136), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||| | ||| | ||||| || ||||| || ||||||||||| |||| | ||| Sbjct 418 CTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTT 359 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || || ||||| | ||||| || ||||| || || ||||| || || | | ||||| Sbjct 358 CTGCCGTCTTCCAACTGCTTT--CCAGCGAAAATGAGTCTCTGTTGATCGGGTGGGATTC 301 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | || || ||||| || || |||||| | || | | | ||||| ||| || |||| Sbjct 300 CCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGCTCAACATCAA 241 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 |||| || || ||||| ||||||||||| ||||| Sbjct 240 GAGTGATGGTCTTGCCAGTGAGAGTCTTAACGAA 207 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| |||||||| || ||||| || | | ||||| |||||||| | Sbjct 632 CAAG-TGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAAAGGGTTCTTCCATCTTCAA 574 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || |||||||||||||| || || || || | | ||| ||||| || ||||| | Sbjct 573 GTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGA 514 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || || | || | | ||||||| ||| || ||||| || || || || | Sbjct 513 TCTTTGCCTTAACGTTTTCAATGGTGTCTGATGGCTCGACGTCAAGGGTGATGGTCTTTC 454 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||||| ||||| Sbjct 453 CGGTAAGGGTCTTAACGAAGATTTGCAT 426 >seq533 Length=4588 Score = 129 bits (142), Expect = 1e-24 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | ||| | || ||||| || |||||||||||||||||||| | || ||| Sbjct 4223 CTAAGTCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTT 4282 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||||| | || || || ||||| || ||||| || || | | || ||| Sbjct 4283 CTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCT 4342 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || |||||||| || || || | || | | | || ||| |||||| |||||| Sbjct 4343 TCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGA 4402 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||||||| || || || | |||||| ||||||| || |||||| Sbjct 4403 GTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTACATTTT 4446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153488795997318