Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq14202 150 4e-31 seq533 143 6e-29 seq18203 141 2e-28 seq16127 104 5e-17 >seq14202 Length=1113 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||||||||||||||| | || | ||| || || |||||||| ||||| ||| Sbjct 844 TCCTTTTGGATGTTGTAGTCGCTCAAAGTTCTGCCGTCTTCAAGTTGTTTACCGGCGAAG 785 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | |||||| || |||||||| |||||||| |||||||| ||||| || | Sbjct 784 ATGAGTCTTTGTTGATCGGGTGGAATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTC 725 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | |||||| || | |||||| |||||||| ||||| ||||| ||| Sbjct 724 TCGATGGTGTCGGATGGTTCGACGTCCAAAGTGATAGTCTTACCGGTCAAGGTCTTCACG 665 Query 283089 AATATCTGCAT 283099 || |||| ||| Sbjct 664 AAGATCTACAT 654 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||||||||| || |||||||| | ||| || | ||||| || ||||| || ||||| || Sbjct 617 TTCTTTTTGAATATTGTAGTCTGAAAGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAA 558 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | | |||||| || || ||||| || || |||||||||||||| || ||| | Sbjct 557 GATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGATCTTTGCCTTAACGTT 498 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | ||||| || || ||||| ||||| || || | |||||||| Sbjct 497 TTCAATGGTGTCTGATGGCTCGACGTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAAC 438 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 437 GAAGATTTGCAT 426 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | || || | ||| || || | || || || || || Sbjct 388 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCTGCCGTCTTCCAACTGCTTTCCAGCGAAA 329 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | ||||| || || || ||||| |||||||||||||| || || || | Sbjct 328 ATGAGTCTCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTT 269 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || || || || | || || || |||||||| ||||| || || | |||||||||| Sbjct 268 TCAATGGTATCTGATGGCTCAACATCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTAACG 209 Query 283089 AATATCTGCATTTT 283102 || || | ||| || Sbjct 208 AAAATTTACATGTT 195 >seq533 Length=4588 Score = 143 bits (158), Expect = 6e-29 Identities = 151/196 (77%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 |||||||||||||||||| |||| |||| || | ||| || || | | || || |||| Sbjct 4252 TTCTTTTTGGATGTTGTAATCAGACAAG-GTTCTGCCGTCTTCCAACTACTTTCCAGCAA 4310 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 |||| | | ||||| ||| |||||||| || |||||||| ||||| || || ||| Sbjct 4311 AGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGT 4370 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 | ||||| || || |||| || || || ||||| || |||||||| ||||||||||| | Sbjct 4371 TTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGA 4430 Query 283087 CGAATATCTGCATTTT 283102 |||| |||| |||||| Sbjct 4431 CGAAGATCTACATTTT 4446 >seq18203 Length=1365 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | || |||| ||| | || |||||| |||||||||||||| | Sbjct 861 ACCACCTCTCAATCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGA 802 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | |||||| || ||||| || ||||| ||||| | | |||||| || || Sbjct 801 AAGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGG 742 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| |||||||||||||||||||| || || | || || || || |||| ||||| Sbjct 741 GATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGAC 682 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 681 GTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 634 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||||||||||||| ||| || | ||||| || ||||| || || ||||| Sbjct 596 TCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAA 537 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | |||||| || |||||||| ||||| ||||||||||| || || ||| | Sbjct 536 ATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTT 477 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || |||||||| || | || || || | |||||| ||||| || || | ||||| ||| Sbjct 476 TCAATAGTGTCTGATGGCTCAACGTCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACG 417 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 416 AAGATTTGCAT 406 Score = 118 bits (130), Expect = 2e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 ||| || |||||||||||||| | |||| || | || || || ||||| || || || | Sbjct 369 TTCCTTCTGGATGTTGTAGTCGGACAAG-GTTCTTCCGTCTTCGAGTTGCTTGCCAGCGA 311 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 |||| | | |||||| || || || || ||||||||||||||||| || || || Sbjct 310 AGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACAT 251 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 | ||||| ||||| || | || || || | |||||| ||||| || || | ||||||| Sbjct 250 TTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAA 191 Query 283087 CGAATATCTGCATTTTCAT 283105 |||| || ||||| || || Sbjct 190 CGAAGATTTGCATGTTTAT 172 Score = 118 bits (130), Expect = 2e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 || ||||||||||||||||| | |||| || | ||| || || ||||| || || || || Sbjct 1052 TCCTTTTGGATGTTGTAGTCGGACAAG-GTTCTGCCGTCTTCAAGTTGCTTACCAGCGAA 994 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | | |||||| || || ||||| |||||||| | |||||| || || ||| | Sbjct 993 GATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTT 934 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | || || ||||| ||||| ||||| || || | ||||| || Sbjct 933 TTCAATGGTGTCTGATGGCTCAACATCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGAC 874 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 873 GAAGATTTGCAT 862 >seq16127 Length=4378 Score = 104 bits (114), Expect = 5e-17 Identities = 257/385 (67%), Gaps = 4/385 (1%) Strand=Plus/Plus Query 273522 CCTTTGTACCACGGCTTCATGGCTACCATA-GGTTCACCCTTCATCAGTCGCTCCACATT 273580 ||||||||||| || |||| | | ||| || || |||||||||| || | || || Sbjct 1777 CCTTTGTACCATGGTCTCATTG-TTTGATATGGCTCGCCCTTCATCATTCTTTTCAAGTT 1835 Query 273581 ACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACC 273640 ||| |||||||||||||||| || |||| | || |||||||| || |||||||| Sbjct 1836 GTCAACTATATCTTTAGGGTTGTGACATGGAATGAAGGTTGACCAACCAGTACCAATACC 1895 Query 273641 GGAAGAACCATTCACCAGAATAC-TCGGGATAATTGGGACATAATATTCGGGCTCAATTT 273699 | || || |||| || || | || || || |||| ||| || || || ||||| Sbjct 1896 CTCTGCTCCGTTAACCA-AACACATTGGAATGATAGGGAGATAGTAGTCAGGTTCAATGC 1954 Query 273700 TATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTC 273759 | | ||| || || | | || || | | ||| ||||| | | ||| | ||| Sbjct 1955 TCTGACCTTCTTCTTCTAAATAATTGAGAACAGCGTCATCTTCTTGAGGGAAGATAGTTC 2014 Query 273760 GCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTT 273819 || || |||| || |||||||| || | | ||| || || |||||||||| Sbjct 2015 TTGTAACTGGGTTCAAATTAGTGAAAATATAACGAGGACTAGCTGCCTCTTTGCCACCTT 2074 Query 273820 GCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGT 273879 || | ||| || | |||| || || ||| |||| |||||||| || ||| Sbjct 2075 AGTTTCTAGTACCGAATTAACCCAGAGGAAGCAGCAAGTTAATGTTGTTTGATCCCACGA 2134 Query 273880 AATCCTGAGCCATATTCACGATAGT 273904 ||| ||| |||||| | | |||||| Sbjct 2135 AATTCTGGGCCATAGTTATGATAGT 2159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046438007991532