Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq18203 125 5e-24 seq14202 109 4e-19 seq533 93.3 3e-14 >seq18203 Length=1365 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-C 44169 || ||||| ||||| | |||| ||| || || |||||||||||||||||| |||| | Sbjct 1088 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGAC 1029 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || | || |||| || || ||||| || || ||||| | | || ||||| | || Sbjct 1028 AAGGTTCTGC-CGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGG 970 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | ||||||||| ||| ||||| ||||| || | |||||||| | | || || Sbjct 969 GATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAAC 910 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || || |||||||| ||||||||||| |||||||||||||| Sbjct 909 ATCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 862 Score = 114 bits (126), Expect = 9e-21 Identities = 168/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||| | |||| |||||| || |||||||||||||||||| Sbjct 639 TTGCATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTA 580 Query 44164 ATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || || || || | || || || ||||| || ||||| || | | || ||| Sbjct 579 GTCACTAAG--GGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGA 522 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | ||||||||| || ||||| ||| | || | || ||||| | Sbjct 521 TCGGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGAT 462 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||| || || |||||||| |||||||||||||||||||||||||| Sbjct 461 GGCTCAACGTCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 406 Score = 113 bits (124), Expect = 3e-20 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| ||||| | |||| |||||| || ||||| ||||||||||| Sbjct 411 TTGCATACCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTA 352 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 |||| | || | | |||| || || ||||| || || ||||| | | || |||| Sbjct 351 GTCGGACAAGGTTCTTC-CGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGAT 293 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGG 44282 | | || | |||||||| || ||||| ||| | || | |||||||| | || Sbjct 292 CGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGG 233 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || |||| || || ||||| || ||||||||||| ||||||||||||||| Sbjct 232 GCTCAACGTCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATG 177 Score = 95.1 bits (104), Expect = 9e-15 Identities = 167/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||| | |||| ||||| || || || ||||||||||| Sbjct 867 TTGCATACCACCTCTCAATCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTA 808 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| || | || || || ||||| ||||| ||||| | | || ||| Sbjct 807 GTCTGAAAGAGTTCT-GC-CATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGA 750 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280 || | || | ||||||||| || ||||| ||| | | ||| | ||||| || | Sbjct 749 TCGGGTGGGATACCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTATCTGA 691 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||| || || |||||||| || |||||||| |||||||||||||| Sbjct 690 AGGCTCGACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 634 >seq14202 Length=1113 Score = 109 bits (120), Expect = 4e-19 Identities = 170/237 (72%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 44105 TTCATT--CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGT 44162 |||||| || ||||| ||||| | |||| ||| || || ||||||||||||||||| Sbjct 888 TTCATTGACCACCTCTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGT 829 Query 44163 AATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 | ||| | | | || |||| || || || || ||||| ||||| | | || ||| Sbjct 828 AGTCGCTCAAAGTTCTGC-CGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGA 770 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280 || | || | ||||||||| ||| ||||| |||| | ||| | |||||||||| Sbjct 769 TCGGGTGGAATACCTTCCTTGTCCTGGATCTTG-GCTTTGACATTCTCGATGGTGTCGGA 711 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || |||| || || ||||| || || | ||||||||||||||| | ||| Sbjct 710 TGGTTCGACGTCCAAAGTGATAGTCTTACCGGTCAAGGTCTTCACGAAGATCTACAT 654 Score = 102 bits (112), Expect = 6e-17 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| |||||||| |||| |||||| || |||||| ||||||||||| Sbjct 431 TTGCATACCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTA 372 Query 44164 ATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| ||| || || |||| |||| |||||| || || || || | | ||| ||| Sbjct 371 GTCGGAGAG--GGTTCTGCCGTCTTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGTTGA 314 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | || || || || ||||| ||| | || | ||||| || | Sbjct 313 TCGGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGAT 254 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || || | || || ||||| || ||||| ||||| ||||| |||| |||| Sbjct 253 GGCTCAACATCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAAATTTACATG 197 Score = 95.1 bits (104), Expect = 9e-15 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| ||| | |||| |||||| || || ||||| || ||||| || Sbjct 656 CATACCTCCTCTCAATCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTC 597 Query 44167 GGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | || || || | || || || ||||| ||||| ||||| | | || ||||| Sbjct 596 TGAAAG--GGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCG 539 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | || | |||||| || || ||||| ||| | || ||| | |||||||| | | Sbjct 538 GGTGGGATACCTTCTTTATCTTGGATCTT-TGCCTTAACGTTTTCAATGGTGTCTGATGG 480 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || || |||||||| || |||||||| |||||||||||||| Sbjct 479 CTCGACGTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 426 >seq533 Length=4588 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGC 44169 || ||||| |||||||| |||| ||| || || || ||||||||||||||||| | | Sbjct 4217 CCACCTCTAAGTCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGAC 4276 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || | || |||| |||| || ||| || |||||||| | | ||| ||||| | || Sbjct 4277 AAGGTTCTGC-CGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGG 4335 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | |||||| || || ||||| ||| | || | ||||| || | | || || Sbjct 4336 AATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTAC 4395 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | ||||| ||||| || || | ||||| |||||||| | ||| Sbjct 4396 ATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTACAT 4443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359891868152586