Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq18203 159 8e-34 seq14202 156 1e-32 seq533 127 5e-24 seq2220 86.0 2e-11 >seq18203 Length=1365 Score = 159 bits (176), Expect = 8e-34 Identities = 169/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || |||||||| || || ||||| | || || || ||| ||| Sbjct 181 CAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCCTCTGAC 240 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| || ||||| ||||||||||| || || || ||| Sbjct 241 ACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAACAA 300 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| |||||||| || || || |||||||| ||||| || |||| |||| || ||| | Sbjct 301 AGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAAC-CTTGTCCGACTACAACAT 359 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||| || |||||||| || || | ||| | ||||||||| Sbjct 360 CCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGA 399 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || ||||| || |||||| | || || || ||||| Sbjct 637 CAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCAGAT 696 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| |||||| || ||||| ||||| ||||| || || || ||| Sbjct 697 ACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAACAA 756 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| || || |||||||| || |||||| | || || ||| || Sbjct 757 AGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAACATC 816 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| || || ||| | || | ||| | ||| Sbjct 817 CAGAAAGAATCTACTCTTCATTTGGTCCTCAGATTGAGA 855 Score = 150 bits (166), Expect = 4e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| ||||| || ||||||||||| || || |||||| Sbjct 865 CAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGATGTTGAGCCATCAGAC 924 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| ||||||| ||||| ||||| || || || ||| Sbjct 925 ACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAACAA 984 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||||||||||| || || || || ||||| || || || |||| |||| || ||| | Sbjct 985 AGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAAC-CTTGTCCGACTACAACAT 1043 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| || ||||| || || | || | ||||| ||| Sbjct 1044 CCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGA 1083 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| ||||| || ||||| | || || || |||||| Sbjct 409 CAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTTTGGACGTTGAGCCATCAGAC 468 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||| || || || ||||| || || || || || ||| Sbjct 469 ACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAACAA 528 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || ||||| || || ||||||||||| || ||| || || ||| || Sbjct 529 AGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAACATC 588 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || ||||| || || |||| Sbjct 589 CAAAAGGAGTCAACCCTTCA-CTTG 612 >seq14202 Length=1113 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || ||||| || |||||||| || || || |||||| Sbjct 429 CAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCCTTGACGTCGAGCCATCAGAC 488 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || |||||| || || |||||||| ||||| || || || ||| Sbjct 489 ACCATTGAAAACGTTAAGGCAAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAACAA 548 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||||||||| || || || ||||||||||| || ||| | || || || | Sbjct 549 AGACTTATCTTCGCCGGCAAGCAACTTGAAGATGGAAGAACCCTTTCAGACTACAATATT 608 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || || | ||| | ||| | ||| Sbjct 609 CAAAAAGAATCTACCCTTCACTTGGTTCTTAGATTGAGA 647 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||||||||| || |||||||| || || || ||||| || || || || ||||| | Sbjct 202 AAATTTTCGTTAAGACTCTCACTGGCAAGACCATCACTCTTGATGTTGAGCCATCAGATA 261 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||| || || ||||| ||||| || |||||||| |||||||| || || || || Sbjct 262 CCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCCGATCAACAGA 321 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 |||| || ||||| ||||| ||| | ||||| || || || || |||| || ||| ||| Sbjct 322 GACTCATTTTCGCTGGAAAGCAGTTGGAAGACGGCAGAACCCTCTCCGACTACAACATCC 381 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | || || ||||| || || | || |||||||||||| Sbjct 382 AGAAGGAGTCAACCCTTCACTTGGTCTTGAGACTCAGA 419 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || |||||||| || | || || || || ||||| | || || ||| || |||||| Sbjct 660 ATCTTCGTGAAGACCTTGACCGGTAAGACTATCACTTTGGACGTCGAACCATCCGACACC 719 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 |||||||| |||||| ||||| |||||||| ||||| || || || || || ||| || Sbjct 720 ATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCCGATCAACAAAGA 779 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || ||||||||||| ||||| || ||||| || || ||| | ||| || ||| ||||| Sbjct 780 CTCATCTTCGCCGGTAAACAACTTGAAGACGGCAGAACTTTGAGCGACTACAACATCCAA 839 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || | || | ||||| ||| Sbjct 840 AAGGAGTCTACTCTCCACTTGGTCCTCAGACTTAGA 875 >seq533 Length=4588 Score = 127 bits (140), Expect = 5e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || ||| | || || || || || || || || || || || || ||| Sbjct 4437 ATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCTGATACC 4378 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| ||||| || |||||||| ||||||||||| || || || || || || || Sbjct 4377 ATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGA 4318 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGTCCA 178105 || ||||| || ||||| || | ||||| || || || |||| | ||||| ||| |||| Sbjct 4317 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAAC-CTTGTCTGATTACAACATCCA 4259 Query 178106 AAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||| || || | || |||||||| ||| Sbjct 4258 AAAAGAATCAACTCTCCACTTGGTCTTGAGACTTAGA 4222 >seq2220 Length=3178 Score = 86.0 bits (94), Expect = 2e-11 Identities = 154/221 (70%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 177926 AATT-TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC- 177983 |||| || || ||||| | ||||| ||||| ||||| || | | || |||||| Sbjct 900 AATTATTTGTCAAAACCTTAACAGGCAAAACTATCACAATCTA--TACTAA-CTCAGATG 844 Query 177984 --ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||| || | | |||| || ||| | || ||||| || || || || ||||| | Sbjct 843 AGACCATTGAAGAATTTAAACTTAAAATTTAAGATAAAGAGGGCATTCCACCTGACCAAC 784 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 || |||| || || || || | | | ||||||||||| ||||| | || || ||| Sbjct 783 AAAGACTCATTTTTGCAGGTATGTAATTAGAAGATGGAAGAACTCTGGGAGACTACAACA 724 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | |||| || || ||||||||| | ||| | ||||||||| Sbjct 723 TTCAAACTGAGTCCACACTGCATTTGGTTCTTAGACTCAGA 683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203384834622852