Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq253 159 4e-34 seq25 159 4e-34 >seq253 Length=82967 Score = 159 bits (176), Expect = 4e-34 Identities = 580/905 (64%), Gaps = 36/905 (4%) Strand=Plus/Minus Query 16679 TAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATG 16738 ||||| | ||| | | |||||||||| |||||||| || | || |||||| | ||||| Sbjct 29911 TAATCTCCAACTCTTCTTTCGAAAAAATTAGTTTTACCTTGTAAAGATATCATATCCATC 29852 Query 16739 AAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTA 16798 | ||||||||||| | | | | ||||||| || | | | ||||||||| Sbjct 29851 CATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCAAATATTAATCTA 29792 Query 16799 TCCGCTACAAATTCTATATATTGGCACATTA-ATTCGCAGTTCATTCCTATAAGACGTAC 16857 || || |||||||| ||||||| ||| | ||| | | ||||| || || | ||| Sbjct 29791 TCTGCAACAAATTCAATATATTATTTCATCATATTAGAA-TTCATACCAATTAATTCTAC 29733 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917 | | |||||| | | |||| || || || |||| || ||| || | Sbjct 29732 TGATAAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGCAGATGAAATTATTTCATG 29673 Query 16918 AACTCGTTCCTCGGACGGTGTAT-GTTTAAGATGTTTAAACATCAGACATGCGAAATCGC 16976 || || || | | ||| | |||| |||||| | | ||||| ||||| || Sbjct 29672 AATTCTTTAATTACTTAATTTATTGATTAA-ATGTTTGTAAAGTAGACAAGCGAAGTCTG 29614 Query 16977 AATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTC 17036 ||| | || || ||||| || | ||| || |||||||| | || |||||| | Sbjct 29613 TATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTGAGTCCAGGCATCAATG 29554 Query 17037 CTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGG 17096 || ||| |||| ||| || || || || || ||||||||||||||||| || || | Sbjct 29553 ATCTTTTTTTTATCCAGAAAATGGCACAAAATGAACCAGAAAAGAATATACCTTCAACAG 29494 Query 17097 ATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCA 17156 | ||||| || ||||||| ||| || | | || || | | |||||||||| Sbjct 29493 AAGCAAAAGCAATTAATCTTTCAGCAAA---TGAATCATTATCATTAATCCATTTCATAG 29437 Query 17157 CCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTT 17216 ||||| || || | | ||| | || | || || || | || || | | || Sbjct 29436 CCCACATTGCCTTCTTTTGTATAACAGGCACATTATCAATAGCATGAAGTAGATAATTTT 29377 Query 17217 TTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGT 17276 |||| | | || |||| || ||||| || | ||| || |||| || || || | Sbjct 29376 TTTCATTTTCATCAGTTATGTAAGTATCAATCAATAGTGAATAGGTTTCTGAATGAATAT 29317 Query 17277 TCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGT 17336 ||||||| |||| || |||||| || || |||| ||||| | | || |||||| Sbjct 29316 TCTCCATAGCTAACTAAAATCCATAGAAACATCTAGCTTCTGGAACTTAAACTTCTGTAC 29257 Query 17337 AGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATA 17396 | ||| || || | ||||| ||||| || || || || || || || || || | || Sbjct 29256 AAAATTATTAAGCCAAGTTTTCATTCACAATACCATCACTAGCTGCAAAGAAGGCAAGTA 29197 Query 17397 TATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTT-------TAA- 17448 || |||||| |||| ||||| || | ||||| ||| || || ||| Sbjct 29196 CATACTTAATAAAATGCTTTTCATCTGAGGTAAGTTTTTCCCAATCTTTAAGATCCTAAA 29137 Query 17449 -----------------ATCTT--TGGATAT--ATCCACTTCTTCGGGGGTCCAAAAACT 17487 ||||| | |||| ||| | |||||| | ||||| ||||| Sbjct 29136 ATTTTATTACTTTTATTATCTTACTTAATATAAATCTATTTCTTCAGCTGTCCAGAAACT 29077 Query 17488 AGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATA 17547 || | ||||||||||||||||||||||||||||| || || || | ||| | Sbjct 29076 TGCTTTATGTTATTTATACATATTCCAAATATCATTGTATTTAATTGGAAAGAGTACAAA 29017 Query 17548 TCTAT 17552 ||||| Sbjct 29016 TCTAT 29012 >seq25 Length=399112 Score = 159 bits (176), Expect = 4e-34 Identities = 521/802 (65%), Gaps = 18/802 (2%) Strand=Plus/Minus Query 16629 CATCCAATGAAAATGTGTTATCTTGTTTATGA---ACAACACCCATTCTTTGGTAATCGC 16685 |||||| | |||| ||||||| ||| | | | ||| || | |||||||||| | Sbjct 189052 CATCCATAGTAAATACTTTATCTTATTTTTTACTCATAACTCCAGCTTTTTGGTAATCTC 188993 Query 16686 TAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAA 16745 ||| | | ||||||| || |||||||| || | || || || | ||||| | |||| Sbjct 188992 CAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGAGATCATATCCATCCATTCAA 188933 Query 16746 AAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTA 16805 ||||||| | | | | ||||||| || | | | ||||||||||| |||| Sbjct 188932 AAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCAAATATTAATCTATCTGCTA 188873 Query 16806 CAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAG 16865 ||||||| ||||||| |||||| | | |||||||| || | || || |||| Sbjct 188872 CAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAATTCAACTGGTAGAG 188813 Query 16866 CTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTT 16925 |||| | | |||| || || || |||| || |||||| | || ||||| Sbjct 188812 CTTCACTGATAAATTCTTTTTCAATTTCAACAGCAGATGAAATAATTTCATGAATTCGTT 188753 Query 16926 CCTCGGACGGTGTATGTTTA--AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAA 16983 | || | | || | | |||||| | | ||||| ||||| || ||| | Sbjct 188752 AAT--TACTTAATTTATTAACTAAATGTTTGTAAAGAAGACAAGCGAAGTCTGTATGAAG 188695 Query 16984 TCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTT 17043 || || ||||| || | ||| || ||||| || | || |||||| | || ||| Sbjct 188694 ACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCAGGCATCAATGATCTTTT 188635 Query 17044 CTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAA 17103 || | ||||||||| || || || ||||||||||| || || || || || ||||| Sbjct 188634 TTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAAATGCCTTCAACAGAAGCAAA 188575 Query 17104 CGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTC 17163 || ||||||| ||| || | | || || ||| |||||||||| ||||| Sbjct 188574 GGCAATTAATCTTTCAGCAAA---TGAATCATTATTATTAATCCATTTCATTGCCCACAT 188518 Query 17164 GGCTTTTTGCTTTA---TGCAATC-CATCGTTTCTATGGCCTTAAATAATTTCTCTTTTT 17219 ||||| | |||| | || | ||| | ||||| || | | | | | ||||| Sbjct 188517 TGCTTTCT--TTTAAATTACAGGCACAT--TATCTATAGCATGGAGAAGATAGTTTTTTT 188462 Query 17220 CCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCT 17279 | | | || ||||||| ||||| || | || || |||| || || || |||| Sbjct 188461 CATTTTCATCAGTTATATAGGTATCAATCAAAAGTGAATATGTTTCAGAATGAATATTCT 188402 Query 17280 CCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGA 17339 |||| || || | |||||| ||||| |||| ||||| | | ||| ||||| ||| Sbjct 188401 CCATAGCCATTTAAAATCCATAAAAACATCTAGCTTCAGGAACTTGTACTTCTGTACAGA 188342 Query 17340 ATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATAT 17399 || || || | ||||| || || || || || || || || || || || | | || Sbjct 188341 ATTATTAAGCCAAGTTTTCATTTACTATACCATCACTTGCTGCAAAGAAAGCAAGGACAT 188282 Query 17400 GCTTAATGAAATATTTTTCGTC 17421 |||||| || | ||||| || Sbjct 188281 ACTTAATAAAGTGCTTTTCATC 188260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517530422975280