Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq253 250 3e-61 >seq253 Length=82967 Score = 250 bits (276), Expect = 3e-61 Identities = 524/776 (68%), Gaps = 9/776 (1%) Strand=Plus/Minus Query 15917 TAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATA 15976 ||||| | ||| | | ||||||| || |||||||| || | ||||||||| | ||||| Sbjct 29911 TAATCTCCAACTCTTCTTTCGAAAAAATTAGTTTTACCTTGTAAAGATATCATATCCATC 29852 Query 15977 AAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTA 16036 | ||||| ||||| | | | | || |||| || | | | | ||||||| Sbjct 29851 CATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCAAATATTAATCTA 29792 Query 16037 TCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACC 16096 ||||| |||||||| ||||||| ||| | | |||| || || || | | ||| Sbjct 29791 TCTGCAACAAATTCAATATATTATTTCATCATATTAGAATTCATACCAATTAATTCTACT 29732 Query 16097 GGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTG 16156 | | ||||| | | ||||| || ||| || |||| || | ||| || || || Sbjct 29731 GATAAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGCAGATGAAATTATTTCA-TG 29673 Query 16157 GCTCGTGTTTCAG-ACGG--TGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCG 16213 | | ||| | || | ||| | ||| ||||| | | |||||| |||||||| Sbjct 29672 AAT--TCTTTAATTACTTAATTTATTGATTAAATGTTTGTAAAGTAGACAAGCGAAGTCT 29615 Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 ||| || ||||| ||||| || | ||| || ||||| || | || ||||| | Sbjct 29614 GTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTGAGTCCAGGCATCAAT 29555 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || ||| |||| |||||| || ||| |||||| || |||||||||||||| |||||| Sbjct 29554 GATCTTTTTTTTATCCAGAAAATGGCACAAAATGAACCAGAAAAGAATATACCTTCAACA 29495 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 || |||||||| ||||||| ||| || | | | ||| | |||| ||||||||| Sbjct 29494 GAAGCAAAAGCAATTAATCTTTCAGCAAATGAATCATTATCATTA---ATCCATTTCATA 29438 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCT 16453 |||| || || | || |||| | || | || || || | || | | | | Sbjct 29437 GCCCACATTGCCTTCTTTTGTATAACAGGCACATTATCAATAGCATGAAGTAGATAATTT 29378 Query 16454 TTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATG 16513 ||||| | ||| |||| || |||||||||| || || ||||||| || || Sbjct 29377 TTTTCATTTTCATCAGTTATGTAAGTATCAATCAATAGTGAATAGGTTTCTGAATGAATA 29318 Query 16514 TTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACG 16573 ||||| || |||| || |||||||||||| |||| ||| || | | || ||||| Sbjct 29317 TTCTCCATAGCTAACTAAAATCCATAGAAACATCTAGCTTCTGGAACTTAAACTTCTGTA 29258 Query 16574 TAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAAT 16633 ||||| || |||| ||| |||||||| ||||| ||||| || ||||| || || | | Sbjct 29257 CAAAATTATTAAGCCAAGTTTTCATTCACAATACCATCACTAGCTGCAAAGAAGGCAAGT 29198 Query 16634 ATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATC 16689 | | |||||| |||| ||||| || || ||||| | | ||||||||| | ||| Sbjct 29197 ACATACTTAATAAAATGCTTTTCATCTGAGGTAAGTTTTTCCCAATCTTTAAGATC 29142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511399402772720