Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq11 116 7e-21 >seq11 Length=551047 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 135619 ACGTGGaaaaaaaTACCCGATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTT 135678 || |||||| ||| | ||||| || |||||||||||| | || | |||||| ||| | Sbjct 285681 ACATGGAAATAAAGAAATGATCCAGTATTGCATATAGAATTAAGAAAATGGGCAGATTGT 285622 Query 135679 TTTATTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGAT 135738 || | || || || | | || ||||| | || || || |||||||| |||| ||| Sbjct 285621 TTGTTAATTGCTCCTCTTTCAGCGAATACTATGGCTAAGATTTCTAATGGTTTATGTGAT 285562 Query 135739 AATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCT 135798 |||||| | || | ||| ||||| |||||| || |||||| | || || |||| Sbjct 285561 AATTTATTAACAAATGTTGCTAGAGCATGGGATTACAATAAACCAATGATATTAGCTCCT 285502 Query 135799 GCAATGAATACTCTTATGTGGGAACATCCTATTACAGAAAAACATAT 135845 |||||||||||| | |||| || |||| || || ||||||| || Sbjct 285501 GCAATGAATACTATGATGTATGAGAATCCAATCACTAAAAAACAAAT 285455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923169727253840