Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq25 367 1e-96 seq253 356 2e-93 >seq25 Length=399112 Score = 367 bits (406), Expect = 1e-96 Identities = 576/817 (71%), Gaps = 18/817 (2%) Strand=Plus/Minus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 |||| ||| ||| | || ||| || ||||||| ||| || ||||||| ||||| Sbjct 189061 AAAAGTCAGCATCCATAGTAAATACTTTATCTTATTTTTTACTCATAACTCCAGCTTTTT 189002 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 | || || | |||||| |||| |||||||| ||||| |||| ||| || || | |||| Sbjct 189001 GGTAATCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGAGATCATATCCA 188942 Query 16008 TAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATC 16067 | | ||||||||||| |||||| ||| |||| ||| ||| | || | ||||| Sbjct 188941 TCCATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCAAATATTAATC 188882 Query 16068 TATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAA 16127 |||| || |||||||| ||||| | ||||||||||| | | |||||||| ||||||| || Sbjct 188881 TATCTGCTACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAATTCAA 188822 Query 16128 CAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGC---TTCAATGATTATAT 16184 | || | ||||| | | ||| | |||||| || | ||| || | ||| ||| || Sbjct 188821 CTGGTAGAGCTTCACTGATAAATTCTTTTTCAATTTCAACAGCAGATGAAATAATTTCAT 188762 Query 16185 CTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAAT 16244 || | | || |||| | || | ||| ||||| | | | |||||| || | Sbjct 188761 GAATTCGTTAATTACTTAATTTA---TTAACTAAATGTTTGTAAAGAAGACAAGCGAAGT 188705 Query 16245 CACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTA 16304 | ||| | ||||| || || ||||| || |||||||| || || || ||||| | Sbjct 188704 CTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCAGGCATCA 188645 Query 16305 GTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAA 16364 | || |||||| |||||||||||||| |||||||||||||||||| || ||||||| Sbjct 188644 ATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAAATGCCTTCAA 188585 Query 16365 CTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttt 16424 | | ||||| |||| |||| ||| | | | || ||| | | |||||||| Sbjct 188584 CAGAAGCAAAGGCAATTAATCTTTCAGCAAA---TGAATCATTATTATTAATCCATTTCA 188528 Query 16425 tagcccaatttgctttttgtttAA-CACAGTTCATGTTCTCTATTGCATTAAATAAATAA 16483 | ||||| ||||||| | || || |||| || || ||||| |||| | | ||| Sbjct 188527 TTGCCCACATTGCTTTCTTTTAAATTACAG-GCACATTATCTATAGCATGGAGAAGATAG 188469 Query 16484 tttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACT--ATACATTTCTGAAT 16541 |||||||| || ||| ||||| ||||| || | ||| | ||| |||| |||| Sbjct 188468 TTTTTTTCATTTTCATCAGTTATATAGGTATCAATCA--AAAGTGAATATGTTTCAGAAT 188411 Query 16542 GAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTT 16601 ||||||||||||| || || | ||| |||||||| ||||||||||| | | |||||||| Sbjct 188410 GAATATTCTCCATAGCCATTTAAAATCCATAAAAACATCTAGCTTCAGGAACTTGTACTT 188351 Query 16602 CAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACG 16661 | | | || || || |||||||| || ||||| ||||| || |||||||| || | Sbjct 188350 CTGTACAGAATTATTAAGCCAAGTTTTCATTTACTATACCATCACTTGCTGCAAAGAAAG 188291 Query 16662 CAAGTATGTGTTTAATAAAAtttttttCGTTATCTGA 16698 |||| | | |||||||| | ||||| |||||| Sbjct 188290 CAAGGACATACTTAATAAAGTGCTTTTC---ATCTGA 188257 >seq253 Length=82967 Score = 356 bits (394), Expect = 2e-93 Identities = 589/843 (70%), Gaps = 19/843 (2%) Strand=Plus/Minus Query 15878 AATTAACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACT 15937 |||||| | |||| ||| ||| | || ||| || ||||| | ||| || ||| ||| Sbjct 29981 AATTAA--TCAAAAGTCAGCATCCATAGTAAATACTTTATCCTATTTTTTACTCATGACT 29924 Query 15938 GACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAA 15997 ||||| ||| || | |||||| |||| || ||||| ||||| |||| ||| || Sbjct 29923 CCAGCTTTTTAATAATCTCCAACTCTTCTTTCGAAAAAATTAGTTTTACCTTGTAAAGAT 29864 Query 15998 ATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCC 16057 || | ||||| | ||||||||||| |||||| ||| |||| ||| ||| | Sbjct 29863 ATCATATCCATCCATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCA 29804 Query 16058 AACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCT 16117 || | ||||||||| || |||||||| ||||| | |||||| | || | | ||||| || Sbjct 29803 AATATTAATCTATCTGCAACAAATTCAATATATTATTTCATCATATTAGAATTCATACCA 29744 Query 16118 ATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGC---TTCA 16174 ||||||| || | | ||||| | | ||| | |||||| || | ||| || | | Sbjct 29743 ATTAATTCTACTGATAAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGCAGATGAA 29684 Query 16175 ATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATA 16234 || ||| || || | | || |||| | || | ||| ||||| | | || | Sbjct 29683 ATTATTTCATGAATTCTTTAATTACTTAATTTA---TTGATTAAATGTTTGTAAAGTAGA 29627 Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 ||||| || || ||| | ||||| || || ||||| || ||||||||||| || Sbjct 29626 CAAGCGAAGTCTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTGAGT 29567 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| | | || |||||| ||||| || || || ||||||||||||||||||| Sbjct 29566 CCAGGCATCAATGATCTTTTTTTTATCCAGAAAATGGCACAAAATGAACCAGAAAAGAAT 29507 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 ||||||||||| | ||||| |||| |||| ||| | | | ||| | | | Sbjct 29506 ATACCTTCAACAGAAGCAAAAGCAATTAATCTTTCAGCAAATGAATCATTATCATTA--- 29450 Query 16415 atccattttttagcccaatttgctttttgtt-tAACACAGTTCATGTTCTCTATTGCATT 16473 |||||||| ||||||| |||| || | || || |||| || || || || |||| Sbjct 29449 ATCCATTTCATAGCCCACATTGCCTTCTTTTGTATAACAGG-CACATTATCAATAGCATG 29391 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 || || |||||||||||| || ||| || |||||||| || | || ||| | Sbjct 29390 AAGTAGATAATTTTTTTCATTTTCATCAGTTATGTAAGTATCAATCAATAGTGAATAGGT 29331 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 ||||||||||||||||||||| |||| || ||| ||||| || ||||||||||| | | Sbjct 29330 TTCTGAATGAATATTCTCCATAGCTAACTAAAATCCATAGAAACATCTAGCTTCTGGAAC 29271 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 || ||||| | |||| || || |||||||| || || || ||||| |||||||| Sbjct 29270 TTAAACTTCTGTACAAAATTATTAAGCCAAGTTTTCATTCACAATACCATCACTAGCTGC 29211 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGA---AAGTTTTAACCA 16710 ||| || ||||||| | |||||||||| ||||| |||||| ||||||| ||| Sbjct 29210 AAAGAAGGCAAGTACATACTTAATAAAATGCTTTTC---ATCTGAGGTAAGTTTTTCCCA 29154 Query 16711 GTC 16713 || Sbjct 29153 ATC 29151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462498436835600