Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq336 138 9e-28 >seq336 Length=64408 Score = 138 bits (152), Expect = 9e-28 Identities = 380/580 (66%), Gaps = 2/580 (0%) Strand=Plus/Minus Query 19963 GGTGTACAAAAAACAGATCGAACCGGAACTGGAACGTTATCTGTATTTGGA-ATGCAATC 20021 || ||||| ||| ||| |||| ||| ||||| | ||| ||||||| | |||| Sbjct 41102 GGAGTACATAAAGATGATAGAACTGGAGTAGGAACTATTTCTATATTTGGGTAAACAATG 41043 Query 20022 TCGATATAACTTGAGAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGG 20081 ||| ||| ||| | |||||| || ||||| || || ||||||| | ||| Sbjct 41042 A-GATTTAATTTGGCTGAATCATTTCCTTTGTTAACAACAAAGAAAGTATTTTTTAGAGG 40984 Query 20082 CGTTGTTGAAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGA 20141 || || || || ||||| |||||| | | |||| || ||| | ||| | || Sbjct 40983 AGTAGTAGAGGAATTATTGTGGTTTTTAAGAGGAGATACTAATGGGAAAATACTTTTGGA 40924 Query 20142 AAAAGGAGTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATT 20201 |||||||||||||||||| | |||| ||| ||| ||| | |||| ||| || Sbjct 40923 TAAAGGAGTTAAGATTTGGGAAGGTAATGGTACTAGAGAATATTTGGATAGCATTGGGTT 40864 Query 20202 TGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGG 20261 || | | || ||||| || || || ||||||| | |||||||||||||||| Sbjct 40863 ATCAAATAGATAGGAACATGATTTAGGACCAGTCTATGGATATTAATGGAGACATTTTGG 40804 Query 20262 AGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAA 20321 ||||||||| || | | ||||| | |||| || ||| || | || | Sbjct 40803 GGCTGAATATAAGGATTGCTAAAGTGATTATAATAATTAAGGTGTTGATTAAGTTAAAGA 40744 Query 20322 TGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAA 20381 || ||| | ||| |||||| || ||| | ||||| || || |||| |||||||| Sbjct 40743 GGTCATTTAATTACTTAAAAATAATCCAGATAGTAGAAGGATAATATTATCTGCCTGGAA 40684 Query 20382 CGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGT 20441 | | ||| | | |||||| || || ||||||||| | | | |||||| || Sbjct 40683 TCCAAGTGATTTAAAATAAATGGCATTACCGCCATGTCATGTAATGTCATAATTTTTTGT 40624 Query 20442 TGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGT 20501 || ||| ||||| ||| |||||| | |||| |||| | || |||| | Sbjct 40623 CGCAAATGGGAAATTGAGTTGTATGATGTATTAGAGATCATGTGATTTTGGTTTGGGAAT 40564 Query 20502 TCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATG 20541 ||| || ||||| || |||||||| ||||||| || ||| Sbjct 40563 TCCATTTAATATAGCTAGTTATGCATTGCTTACTTAAATG 40524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399172586580970