Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq253 336 2e-87 seq25 320 2e-82 >seq253 Length=82967 Score = 336 bits (372), Expect = 2e-87 Identities = 580/834 (70%), Gaps = 19/834 (2%) Strand=Plus/Minus Query 13857 AAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13916 |||| ||| |||| | | ||| || ||||| | ||| ||| || || || ||||| Sbjct 29973 AAAAGTCAGCATCCATAGTAAATACTTTATCCTATTTTTTACTCATGACTCCAGCTTTTT 29914 Query 13917 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13976 ||| || | ||||||| |||| || || ||||||||||||| | ||||| | |||| Sbjct 29913 AATAATCTCCAACTCTTCTTTCGAAAAAATTAGTTTTACCTTGTAAAGATATCATATCCA 29854 Query 13977 TAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 14036 | | ||||| ||||| |||| || | | |||| | |||| | | |||| ||||| Sbjct 29853 TCCATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCAAATATTAATC 29794 Query 14037 TATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 14096 |||| |||| || |||||||||| ||| | || | |||||||||| |||| || || Sbjct 29793 TATCTGCAACAAATTCAATATATTATTTCATCATATTAGAATTCATACCAATTAATTCTA 29734 Query 14097 CAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 14155 | | | | || ||| |||||||||||| || ||||| | | | | || | Sbjct 29733 CTGATAA-AGCTTCACTAATAAATTCTTTTTCAATTTCAACAGCA--GATGAAATTATT- 29678 Query 14156 GTAATAATTTCATTAG--AAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGCAAA 14211 | || | ||| ||| | | |||| ||| |||||| ||| || ||| || || Sbjct 29677 -TCATGAATTCTTTAATTACTTAATTTATTGATTAAATGTTTGTAAAGTAGACAAGCGAA 29619 Query 14212 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 14271 || |||||| || |||||||| ||| | ||| ||||||||||| | ||| ||||| Sbjct 29618 GTCTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTGAGTCCAGGCAT 29559 Query 14272 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 14331 |||| || |||||||| ||| || || ||| ||||| || ||||||||||| || || Sbjct 29558 CAATGATCTTTTTTTTATCCAGAAAATGGCACAAAATGAACCAGAAAAGAATATACCTTC 29499 Query 14332 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14391 ||| | |||||| || ||||||| ||| |||| || | || | || |||||||| Sbjct 29498 AACAGAAGCAAAAGCAATTAATCTTTCAGCAAATGAATCATTATCATT---AATCCATTT 29442 Query 14392 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATG 14451 ||||||| | || |||| |||| | || | |||||||||| || || || Sbjct 29441 CATAGCCCACATTGCCTTCTTTTGTATAACAGGCACATTATCAATAGCATGAAGTAGATA 29382 Query 14452 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511 | || || || | | ||||| |||||||| | || ||| |||| || || Sbjct 29381 ATTTTTTTCATTTTCATCAGTTATGTAAGTATCAATCAATAGTGAATAGGTTTCTGAATG 29322 Query 14512 TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14571 || || |||||||||| || ||| ||||| |||||||||||||||| || || || Sbjct 29321 AATATTCTCCATAGCTAACTAAAATCCATAGAAACATCTAGCTTCTGGAACTTAAACTTC 29262 Query 14572 TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14631 || ||||| || ||||| |||||||| || |||||||||||||||||||| || || Sbjct 29261 TGTACAAAATTATTAAGCCAAGTTTTCATTCACAATACCATCACTAGCTGCAAAGAAGGC 29202 Query 14632 CAATATGTTTTTAATAAAGTATTGCTCTTCAT---TGCTGAGTTTTTTCCAATC 14682 | || | ||||||| | |||| ||||| | | ||||||| |||||| Sbjct 29201 AAGTACATACTTAATAA---AATGCTTTTCATCTGAGGTAAGTTTTTCCCAATC 29151 >seq25 Length=399112 Score = 320 bits (354), Expect = 2e-82 Identities = 578/836 (69%), Gaps = 23/836 (3%) Strand=Plus/Minus Query 13857 AAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13916 |||| ||| |||| | | ||| || ||||| | ||| ||| ||||| || ||||| Sbjct 189061 AAAAGTCAGCATCCATAGTAAATACTTTATCTTATTTTTTACTCATAACTCCAGCTTTTT 189002 Query 13917 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13976 | || || | ||||||| |||| ||||| ||||||||||||| | || || | |||| Sbjct 189001 GGTAATCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGAGATCATATCCA 188942 Query 13977 TAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 14036 | | ||||| ||||| |||| || | | |||| | |||| | | |||| ||||| Sbjct 188941 TCCATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCAAATATTAATC 188882 Query 14037 TATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 14096 |||| || | || |||||||||| |||||||| | ||||||| || |||| || | Sbjct 188881 TATCTGCTACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAATTCAA 188822 Query 14097 CAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCG 14156 | || | | | | |||||||||||| || ||||| | | | |||||| Sbjct 188821 CTGGTAGAGCTTCACTGATAAATTCTTTTTCAATTTCAACAGCA--GATGA-AATAATT- 188766 Query 14157 TAATAATTTCATTAG--AAGGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAAA 14212 | || | ||| ||| | | |||| || |||||| ||| | ||| || || Sbjct 188765 TCATGAATTCGTTAATTACTTAATTTATTAACTAAATGTTTGTAAAGAAGACAAGCGAAG 188706 Query 14213 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 14272 || |||||| || |||||||| ||| | ||| |||||||| || | ||| |||||| Sbjct 188705 TCTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCAGGCATC 188646 Query 14273 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 14332 ||| || |||||| | ||||||||| ||| ||||| || |||||||| || || ||| Sbjct 188645 AATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAAATGCCTTCA 188586 Query 14333 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14392 || | |||||| || ||||||| ||| |||| || | || || || |||||||| Sbjct 188585 ACAGAAGCAAAGGCAATTAATCTTTCAGCAAATGAATCATTATTATTA---ATCCATTTC 188529 Query 14393 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGT 14452 | ||||| | ||| |||| ||| | | || | || ||||||| | | || Sbjct 188528 ATTGCCCACATTGCTTTCTTTTAAATTACAGGCACATTATCTATAGCATGGAGAAGATAG 188469 Query 14453 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT---AAGTAAGCTATACATTTCAGAG 14509 | || || || | | || || |||||||| |||| | ||| ||||||| Sbjct 188468 TTTTTTTCATTTTCATCAGTTATATAGGTATCAATCAAAAGTGA---ATATGTTTCAGAA 188412 Query 14510 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACC 14569 || || || |||||||| || | ||| |||||||||||||||||||| | |||||| Sbjct 188411 TGAATATTCTCCATAGCCATTTAAAATCCATAAAAACATCTAGCTTCAGGAACTTGTACT 188352 Query 14570 TCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14629 |||| | ||| || ||||| |||||||| |||||||||||||| |||||||| || Sbjct 188351 TCTGTACAGAATTATTAAGCCAAGTTTTCATTTACTATACCATCACTTGCTGCAAAGAAA 188292 Query 14630 GCCAATATGTTTTTAATAAAGTATTGCTCTTCAT---TGCTGAGTTTTTTCCAATC 14682 || | | | ||||||||| |||| ||||| | ||||||||| |||||| Sbjct 188291 GCAAGGACATACTTAATAAAG---TGCTTTTCATCTGAGGTGAGTTTTTCCCAATC 188239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482331455215280