Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq454 102 6e-17 seq114 102 6e-17 seq56 86.0 5e-12 >seq454 Length=44262 Score = 102 bits (112), Expect = 6e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || ||| | || | ||||||||||||||| |||| |||||| ||||| | Sbjct 41493 TCCTCCTCTTAATCTCAAAACTAAGTGAAGTGTTGATTCCTTTTAAATGTTATAGTCTGA 41552 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | ||||| |||| ||| || ||| ||||||||||||||| ||| || Sbjct 41553 AAGTGTTCTTCCGTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTGTTAATCGGGTGG 41612 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||| || |||| | || ||||| ||| |||||| || || Sbjct 41613 GATTCCTTCCTTGTCTTAGATTT-TAGCTTTGACAGCATCAATTGTGTCAGATGGTTCAA 41671 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||| || || | || || || | ||| ||||| ||||||| |||| || Sbjct 41672 CATCAAGAGTAATTGTCTTTCCTGTGAGTGTCTTTACGAAAATTTACATTGTT 41724 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 18095 TTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTC 18154 ||| ||||| | || ||| | || | ||||||||||||||| |||| |||||| ||||| Sbjct 41034 TTAGCCTCCTCTTAATCTCAAAACTAAGTGAAGTGTTGATTCCTTTTAAATGTTATAGTC 41093 Query 18155 GGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCAC 18214 | | |||| | | ||||| |||| ||| || ||| |||||||||||| || ||| Sbjct 41094 TGAAAGTGTTCTTCCGTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTATTAATCGGG 41153 Query 18215 GGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCT 18273 || | |||||||| || |||| | || ||||| ||| |||||| || | Sbjct 41154 TGGGATTCCTTCCTTGTCTTAGATTT-TGGCTTTGACAGCATCAATTGTGTCAGATGGTT 41212 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 | |||| || || | || || || | ||| || ||||| |||| |||| Sbjct 41213 CAACATCAAGAGTAATTGTCTTTCCTGTGAGTGTCTTGACAAAGATTTACATT 41265 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | | ||| | || | ||||||||||||||| |||| ||||| || || | Sbjct 41265 TCCTCCTCTCAATCTCAAAACTAAGTGAAGTGTTGATTCCTTTTAGATGTTATAATCTGA 41324 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| ||| |||||| |||| ||| || || |||||||||||| || ||| || Sbjct 41325 AAGTGTTCTACCATCTTCTAATTATTTTCCAGCGAAGATAAGTCTTTATTAATCGGGTGG 41384 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||| || |||| | || ||||| ||| |||||| || || Sbjct 41385 GATTCCTTCCTTGTCTTAGATTT-TAGCTTTGACAGCATCAATTGTGTCAGATGGTTCAA 41443 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| || || |||| || || | ||| || ||||| |||| |||| Sbjct 41444 CATCAAGAGTAATAGTTTTTCCTGTGAGTGTCTTGACAAAGATTTACATT 41493 >seq114 Length=165420 Score = 102 bits (112), Expect = 6e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || |||||||| |||| |||||| || || | | |||| | | |||||| |||| Sbjct 163586 TGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAAAGTGTTCTTCCATCTTCTAATTAC 163645 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| | || ||||||| || ||| || | |||||||| || ||||| Sbjct 163646 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTA 163705 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| ||| |||||| || || |||| |||||| |||| ||||| Sbjct 163706 GCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTACCGGTT 163765 Query 18303 AATGTTTTTACAAAAATTTGCAT-TTTTAAA 18332 |||||||| |||||||||||||| |||||| Sbjct 163766 AATGTTTTAACAAAAATTTGCATAGTTTAAA 163796 Score = 100 bits (110), Expect = 2e-16 Identities = 165/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || | || ||| | || | ||| || |||||||| |||| |||||| || || | Sbjct 141192 TCCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAATCTGA 141133 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | |||||| |||| || || ||| | || ||||||| || ||| || Sbjct 141132 AAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 141073 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||||| |||||| ||| |||||| || || Sbjct 141072 AATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCATCAATAGTGTCTGATGGTTCAAC 141013 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC--ATTTTTAAA 18332 |||| ||||| |||| || || |||||||| |||||||||||| ||||||||| Sbjct 141012 ATCAAGAGTGATTGTTTTACCTGTTAATGTTTTAACAAAAATTTGCATATTTTTAAA 140956 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 ||| || |||||||| |||| |||||| || || | | |||| | | |||||| |||| Sbjct 165103 GTGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAAAGTGTTCTTCCATCTTCTAATTA 165162 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| | || ||||||| || ||| || | |||||||| || ||||| Sbjct 165163 TTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTT 165222 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 |||||| ||| |||||| || || |||| ||||| | || || || Sbjct 165223 AGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATAGTCTTTCCAGT 165282 Query 18302 CAATGTTTTTACAAAAATTTGCATTTTTA 18330 |||||||||||||| |||| ||||| || Sbjct 165283 TAATGTTTTTACAAATATTTACATTTCTA 165311 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || |||||||| |||| |||||| || || | | |||| | | |||||| |||| | Sbjct 164307 TGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAAAGTGTTCTTCCATCTTCTAATTAT 164366 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| | || ||||||| || ||| || | |||||||| || ||||| Sbjct 164367 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTA 164426 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| ||| |||||| || || |||| ||||| | || || || Sbjct 164427 GCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATAGTCTTTCCAGTT 164486 Query 18303 AATGTTTTTACAAAAATTTGCATTTTTA 18330 |||||||||||||| |||| ||||| || Sbjct 164487 AATGTTTTTACAAATATTTACATTTCTA 164514 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || |||||||| |||| ||| || || || | | |||| | | |||||| |||| Sbjct 139709 TGGAGAGTTGATTCCTTTTAAATATTATAATCTGAAAGTGTTCTTCCATCTTCTAATTAC 139650 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| | || ||||||| || ||| || | ||||||||||| ||||| Sbjct 139649 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTATCTTAAATTTTA 139590 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| ||| ||||| || || |||| ||||| | || || || Sbjct 139589 GCCTTGACAGCGTCAATGGTGTCTGATGGTTCAACATCAAGAGTGATAGTCTTTCCAGTT 139530 Query 18303 AATGTTTTTACAAAAATTTGC--ATTTTTAAA 18332 |||||||| |||||||||||| ||||||||| Sbjct 139529 AATGTTTTAACAAAAATTTGCATATTTTTAAA 139498 >seq56 Length=265680 Score = 86.0 bits (94), Expect = 5e-12 Identities = 168/248 (68%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || ||| | ||| | ||||| ||||||||||||| |||||| || || | Sbjct 113496 CCTCCTCTTAATCTCAATACTAAATGAAGAGTTGATTCTTTTTAAATGTTATAATCTGAA 113437 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | |||||| | ||| || || ||| | || | ||||| |||||| || Sbjct 113436 AGAGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGAGGA 113377 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| ||| | ||| || ||| ||||| || || Sbjct 113376 ATTCCTTCTTTATCTTAAATCTTAGCCTTAACAGCATCAATGGTGTCTGAAGGTTCTACA 113317 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT----TTTTAAACT 18334 |||| ||||| | || || ||||| ||||| |||||||||| ||| ||||||| | Sbjct 113316 TCAAGTGTGATAGTCTTTCCCGTCAAGGTTTTAACAAAAATTTACATAATATTTTAAATT 113257 Query 18335 CTTATAAA 18342 | ||||| Sbjct 113256 TTAATAAA 113249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379333153843770