Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq454 87.8 2e-12 seq112 87.8 2e-12 >seq454 Length=44262 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 31189 AAACA-TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||||| || |||||||||||||||| || ||||| || || || || | || ||||||| Sbjct 41725 AAACAATGTAAATTTTCGTAAAGACACTCACAGGAAAGACAATTACTCTTGATGTTGAAC 41666 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| | || | |||||| | ||| ||||||||||| | || |||| Sbjct 41665 CATCTGACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAGGAAGGAATCCCACCCG 41606 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | | || | || || || || || ||| | || |||||| | || | || | Sbjct 41605 ATTAACAAAGACTTATCTTTGCAGGAAAATAATTAGAAGACGGAAGAACACTTTCAGACT 41546 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCA 31395 |||||||| |||| ||||| || ||||| Sbjct 41545 ATAACATTTAAAAGGAATCAACACTTCA 41518 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| |||| || || ||||| || ||||| ||||| || || | || |||||||| || Sbjct 41492 ATGTAAATCTTTGTCAAGACACTCACAGGAAAAACTATTACTCTTGATGTTGAACCATCT 41433 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| ||||||||||| | || ||||| | Sbjct 41432 GACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAGGAAGGAATCCCACCCGATTAA 41373 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 | | || || |||||||| ||| | || ||||| || || | ||||||||| Sbjct 41372 TAAAGACTTATCTTCGCTGGAAAATAATTAGAAGATGGTAGAACACTTTCAGATTATAAC 41313 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || |||| ||||| || ||||| | || | ||| |||| || || Sbjct 41312 ATCTAAAAGGAATCAACACTTCACTTAGTTTTGAGATTGAGAGGAGG 41266 >seq112 Length=167324 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||| ||||||| || ||||| || || || || || ||||| | || ||||| || Sbjct 45269 AATATGTAAATTTTTGTTAAGACCCTTACGGGTAAGACCATCACACTTGATGTTGAGCCA 45328 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | | |||| | || || || ||| | |||||||||||| | || ||||| Sbjct 45329 TCTGATACTATCGATGCTGTTAAGGCAAAGA-TCTAGGACAAGGAAGGAATCCCTCCCGA 45387 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 | | | |||| || ||||| || || ||||| || | ||| | ||||| Sbjct 45388 TTAATAAAGATTAATTTTTGCTGGAAAGCAATTGGAGGATGGAAGAACTCTTTCAGATTA 45447 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || |||||||||| ||||| ||| | ||| | ||||| || || ||| Sbjct 45448 TAATATCTAAAAAGAATCAACTCTCCATTTAGTATTGAGACTCAGAGGAGGT 45499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445753327900320