Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq25 141 2e-28 seq253 111 3e-19 >seq25 Length=399112 Score = 141 bits (156), Expect = 2e-28 Identities = 440/669 (66%), Gaps = 29/669 (4%) Strand=Plus/Plus Query 101578 GGATCCTAAAGATTGGGAGAAACTCACTCAAGATGAGAAGGATTTCATTCTCCAGATTCT 101637 ||||| |||||||||||| |||||||| |||||| ||| | || ||| | | || Sbjct 188229 GGATCTTAAAGATTGGGAAAAACTCACCTCAGATGAAAAGCACTTTATTAAGTATGTCCT 188288 Query 101638 GGCGTTCTTTGCATCCTCTGACGGAATTGTAATTGAAAATCTTAC--AACACGTCTTCGT 101695 || ||||||||| | ||| || || |||| |||||| | | || | ||| || Sbjct 188289 TGCTTTCTTTGCAGCAAGTGATGGTATAGTAAATGAAAACTTGGCTTAATAATTCT--GT 188346 Query 101696 CAAGTGGCGCAGATTCCAGAAGCGAGGAGTTTCTTTGACTTCCAAGTTGGAATGGAGAGT 101755 || | || |||| ||||| || |||| | || || || | | ||||||| | Sbjct 188347 ACAGAAGTACAAGTTCCTGAAGCTAGATGTTTTTATGGATTTTAAATGGCTATGGAGAAT 188406 Query 101756 ATTCATG--GCAACGTCTACGGAGAACTGATTGATAGACTGGTGCCCGACGAAAAAGACA 101813 |||||| | ||| | | | | ||||||||| | | || ||||| || | Sbjct 188407 ATTCATTCTGAAACATATTC--ACTTTTGATTGATACCTATATAACTGATGAAAATGAAA 188464 Query 101814 AGG-CTATCTTGTTTAACGCTGCACAACACTTCCCCGCCATCAAGAAGAAGGAGCA--GT 101870 | ||||||| | | ||| | | | | || | || | ||||| |||| || Sbjct 188465 AAAACTATCTTCTCCAT-GCTATAGATAATGTGCCTGTAATTTAAAAGAA--AGCAATGT 188521 Query 101871 GGGCTATTAATTGGATGCAAAGCAATAACGATT---TGGCGGAACTAATTGTTGCCTTTG 101927 |||| || || ||||| | | |||| |||| | || ||| | | ||||||||| Sbjct 188522 GGGCAATGAAATGGATTAATA---ATAATGATTCATTTGCTGAAAGATTAATTGCCTTTG 188578 Query 101928 CTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATCAAGAACA 101987 || | |||||||| || |||||| |||| |||| | || || |||||||| || | Sbjct 188579 CTTCTGTTGAAGGCATTTTCTTTTCTGGTTCATTTTGTGCTATATTTTGGATCAAAAAAA 188638 Query 101988 GGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAAGGTCTTC 102047 | | ||||||| ||||||| || ||||| || ||||| || || |||||||||| Sbjct 188639 GATCATTGATGCCTGGACTCACCTTTTCAAATGAATTAATTTCAAGAGATGAAGGTCTTC 188698 Query 102048 ATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCAAG---AG 102104 || ||||| || || | || | ||| | ||| ||| ||| || ||| Sbjct 188699 ATACAGACTTCGCTTGTCTTCTTTACAAACA---TTTAGTTAATA---AATTAAGTAATT 188752 Query 102105 AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCACAGTTT 102164 || | |||| ||||||| | | || || ||||||| |||||||| ||| | Sbjct 188753 AACGAATTCATGAAATTATTTCATCTGCTGTTGAAATTGAAAAAGAATTTATCAGTGAAG 188812 Query 102165 CCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGAATTTG 102224 | || || ||| ||||| | |||||||| | || || |||| | || |||||||||| Sbjct 188813 CTCTACCAGTTGAATTAATTGGAATGAATTCTAATTTAATGAAATAATATATTGAATTTG 188872 Query 102225 TGGCAGATA 102233 | ||||||| Sbjct 188873 TAGCAGATA 188881 >seq253 Length=82967 Score = 111 bits (122), Expect = 3e-19 Identities = 433/668 (65%), Gaps = 27/668 (4%) Strand=Plus/Plus Query 101578 GGATCCTAAAGATTGGGAGAAACTCACTCAAGATGAGAAGGATTTCATTCTCCAGATTCT 101637 ||||| |||||||||||| ||||| || |||||| ||| |||| ||| | | || Sbjct 29141 GGATCTTAAAGATTGGGAAAAACTTACCTCAGATGAAAAGCATTTTATTAAGTATGTACT 29200 Query 101638 GGCGTTCTTTGCATCCTCTGACGGAATTGTAATTGAAAATCTTACAACACGTCTTCGTCA 101697 || ||||||||| | ||| || ||||| | |||||| | | | || || Sbjct 29201 TGCCTTCTTTGCAGCTAGTGATGGTATTGTGAATGAAAACTTGGCTTAATAATTTTGTAC 29260 Query 101698 AGTGGCGCAGATTCCAGAAGCGAGGAGTTTCTTTGACTTCCAAGTTGGAATGGAGAGTAT 101757 || | | |||||||||| || |||||| || || | | | ||||||| ||| Sbjct 29261 AGAAGTTTAAGTTCCAGAAGCTAGATGTTTCTATGGATTTTAGTTAGCTATGGAGAATAT 29320 Query 101758 TCATG--GCAACGTCTACGGAGAACTGATTGATAGACTGGTGCCCGACGAAAAAGACAAG 101815 |||| | ||| | | | | | ||||||||| | | || ||||| || || Sbjct 29321 TCATTCAGAAACCTATTC--ACTATTGATTGATACTTACATAACTGATGAAAATGAAAAA 29378 Query 101816 GCT-ATCTTGTTTAACGCTGCACAACACTTCCCCGCCATCAAGAAGAAGGAGCAGTGGGC 101874 | |||| || | ||| | | | || | || | ||||||| |||||| Sbjct 29379 AATTATCTACTTCAT-GCTATTGATAATGTGCCTGTTATACAAAAGAAGGCAATGTGGGC 29437 Query 101875 TATTAATTGGATGCAAAGCAATAACGATT---TGGCGGAACTAATTGTTGCCTTTGCTGC 101931 ||| || ||||| || | |||| |||| | || ||| | | |||| |||||| | Sbjct 29438 TATGAAATGGATT-AATG--ATAATGATTCATTTGCTGAAAGATTAATTGCTTTTGCTTC 29494 Query 101932 AGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATCAAGAACAGGGG 101991 |||||||| || |||||| |||| |||| ||||||||||||| || || || Sbjct 29495 TGTTGAAGGTATATTCTTTTCTGGTTCATTTTGTGCCATTTTCTGGATAAAAAAAAGATC 29554 Query 101992 TATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAAGGTCTTCATCG 102051 | ||||||| ||||| | || ||||| || ||||| || || |||||||||||| Sbjct 29555 ATTGATGCCTGGACTCACATTTTCAAATGAATTAATTTCAAGAGATGAAGGTCTTCATAC 29614 Query 102052 CGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCAAG---AGAAAG 102108 ||||| || || | || | ||| | ||| | ||| || ||| |||| Sbjct 29615 AGACTTCGCTTGTCTACTTTACAAACA---TTTAATCAATA---AATTAAGTAATTAAAG 29668 Query 102109 GATTCTTGAAAT--TGTCA-CTGAAGCCGTCCGAATTGAACAAGAATTTCTCACAGTTTC 102165 |||| |||||| | ||| || || || ||||||| |||||||| | | | | Sbjct 29669 AATTCATGAAATAATTTCATCT---GCTGTTGAAATTGAAAAAGAATTTATTAGTGAAGC 29725 Query 102166 CCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGAATTTGT 102225 | | || ||||| | || ||||| | || |||||| | || ||||||||||| Sbjct 29726 TTTATCAGTAGAATTAATTGGTATGAATTCTAATATGATGAAATAATATATTGAATTTGT 29785 Query 102226 GGCAGATA 102233 ||||||| Sbjct 29786 TGCAGATA 29793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989554254960430