Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq1532 172 1e-38 seq1104 114 3e-21 seq1730 111 4e-20 >seq1532 Length=1741 Score = 172 bits (190), Expect = 1e-38 Identities = 369/544 (68%), Gaps = 21/544 (4%) Strand=Plus/Minus Query 5240 CCATGCGCAACGAAACCCGCAAACAGTTCGACGCCTACCTGGCGCAGCTCGCCAAGCTCA 5299 |||||||||| ||||||||| | ||| || |||| ||||| |||| |||||| Sbjct 1628 CCATGCGCAATGAAACCCGCGCTCTCTTCAACTCCTATTGCTCGCAGATCGCGCAGCTCA 1569 Query 5300 ACGGCGTGA---ACTCCGCCGTCCAGACCTTCGCCGTCGAGCCGAGTGTCCAGCAGAAGC 5356 |||| ||| | || ||| ||| ||||| |||| ||| ||| ||||||||| Sbjct 1568 ACGGTGTGCCTGATGCCACCGCCCAA---TTCGCGGTCGCCCCGTCCGTCGAGCAGAAGC 1512 Query 5357 TGGAGCAACGTATTCAGGAGTCCAGCGAGTTCCTGAAGCAGATCAACGTC--TACGGCG- 5413 | || | || |||| || ||| |||||||| ||||||| || | ||| | Sbjct 1511 TCGAAGACAAGATCAAGGAATCGTCCGAATTCCTGAATTCGATCAACATCATTCCGGTGA 1452 Query 5414 TCGACGAGCTGCAGGGCGAGAAGATCGGCATCGGCGTCNNNNNNACCATCGCCAGCCGTA 5473 |||| || | ||| | || | | | ||| | | ||||||||| | || | Sbjct 1451 TCGATCAG--GAAGGTC-AGGTGCTGGCCATTTCCACCGCCCGCACCATCGCCGGTCGCA 1395 Query 5474 CCGATACCACTGGCGACGGTGTACGCAAGCCGCGCGACG----TGTCCGCGCTCGACAAC 5529 |||| |||| |||| | ||||| ||| |||| || | |||| || || Sbjct 1394 CCGACACCAGCGGCGGCACCCGCCGCAACCCGACCGACCCGAATGACAGCGCG-GAAAAG 1336 Query 5530 CAGCGTTACGAGTGCAAGCACACCGACTTCGACAC--CGCAATCACCTACGCCATGCTCG 5587 | || ||| |||||| | ||||| || ||| |||| || ||| ||| || | | Sbjct 1335 CGCCGCTACCTCTGCAAGAAGACCGATTTTGACTGGGCGCAGTC--CTATGCCCTGATGG 1278 Query 5588 ACGCCTGGGCCAAGTTCCCCGAGTTCCAGGCCCTGCTGCGCGACGCGATCCTCAAGCGCC 5647 | || ||| | | || || |||||| | ||| ||||||| |||||||| || | | Sbjct 1277 ATGCTTGGCGCCACAAACCGGAATTCCAGACGCTGATGCGCGATGCGATCCTGAAACAGC 1218 Query 5648 AGGCCCTCGACCGCCTGATGATCGGCTTCAACGGCACCAGCGCCGCGGCTACCACCAACC 5707 ||| || |||||| | |||||||||| |||||||||||||| ||||| ||| ||| Sbjct 1217 AGGGCCGCGACCGGATCATGATCGGCTGGAACGGCACCAGCGCGGCGGCCCAGACCGACC 1158 Query 5708 GCGCCGCCAACCCGCTGCTGCAGGACGTGAACATTGGCTGGTTCCAGCAGTACCGCAACA 5767 ||| |||||||| ||||||||||||||||||| |||||| || || || ||| ||| Sbjct 1157 GCGTGGCCAACCCCATGCTGCAGGACGTGAACATCGGCTGGGTCAAGAAGCTGCGCGACA 1098 Query 5768 ACGC 5771 | || Sbjct 1097 ATGC 1094 Score = 105 bits (116), Expect = 2e-18 Identities = 287/428 (67%), Gaps = 21/428 (5%) Strand=Plus/Minus Query 5829 CGCCGACGCCGACTACAAGAACCTCGACGCCCTGGTGTTCGACGTGGTCAGCAGCCTGAT 5888 |||||| ||||| |||| ||||| || |||||| |||| || ||| || |||| Sbjct 964 CGCCGATGCCGATTACAGCTCGCTCGATGCGCTGGTGCTCGA--TGCCAAGCGGC-TGAT 908 Query 5889 CGATCCC---TGGCACCGCCGTGACCCGGGCCTGGTGGTGATCCTCGGCCGCGAGCTGGT 5945 | ||| ||| ||| |||| | |||||||||||| |||||| || ||||| Sbjct 907 C---CCCGAATGGTGGCGCGGTGATACCTCGCTGGTGGTGATCGTCGGCCATGATCTGGT 851 Query 5946 CCACGACAAGTACTTCCCGATGGTGAACAAG-GACCAGCCGGCAACCGA-GAAGATCG-- 6001 | | ||||| || ||| || | || | |||| || | ||| | || ||| Sbjct 850 CGATGACAAATATTTCAACATCGCC--CAGGCGACCGGCGCCGAGGCGATGCAGGTCGAA 793 Query 6002 -CCACCGACCTCATCCTG---TCGCAGAAGCGCATGGGCGGCCTGCCGCCGGTGGAAGTG 6057 ||||||||| ||||||| ||| || | || ||||||||||| | ||| || Sbjct 792 GCCACCGACCGCATCCTGCGCTCGACAAAACAGATCGGCGGCCTGCCCGCCGTGCGCGTC 733 Query 6058 CCCTACGTGCCCGAGAAGGGCCTCATGGTCACCACCCTGAAGAACCTGTCGCTCTACTGG 6117 |||| | | || | || | ||||| |||| ||| | ||||| ||| |||| | Sbjct 732 CCCTTCTTCCCGGCCAACGCGATCATGATCACGCGGCTGGATAACCTCTCGATCTATGTG 673 Query 6118 CAGATCGGCGGTCGCCGCCGCTACCTGAAGGAGGTACCGGAGAAGAACCGCATCGAGAAC 6177 ||| ||| ||||||||| | || ||||| | ||||| | ||||| |||| ||| Sbjct 672 CAGGAAGGCACCCGCCGCCGCCAGCTCAAGGATGAGCCGGAATACAACCGGATCGCCAAC 613 Query 6178 TACGAGTCCAGCAACGACGCCTACGTCGTCGAGGACTACGGCCTCGGCTGCCT-GGTCGA 6236 || ||| | |||||| ||||| || ||||||| |||| | || |||| ||||| Sbjct 612 TATGAGAGCGTCAACGAGGCCTATGTGATCGAGGAATACGAGAT-GGTCGCCTATGTCGA 554 Query 6237 GAACATCG 6244 ||| |||| Sbjct 553 GAATATCG 546 >seq1104 Length=3343 Score = 114 bits (126), Expect = 3e-21 Identities = 328/493 (67%), Gaps = 30/493 (6%) Strand=Plus/Plus Query 17037 TCGCCACCGCGATCATCGGCCTGGTAGCCACCGCCGAAGACGCCGACGCCACCGCCTTTC 17096 |||||||| | |||||||| |||| | ||||| || || |||||||| |||| Sbjct 1527 TCGCCACCTCTGTCATCGGCATGGTTGTGACCGCGCCGGATGCGGACGCCACGATGTTTC 1586 Query 17097 CACTCGATACGCCGGTACTCATCACCAACGTGCAGGCTGCCATCGGCAAGGCGGGCACCA 17156 | |||||||||||||| || || |||| || | | | || | | |||||| || || | Sbjct 1587 CGCTCGATACGCCGGTCCTGATTTCCAATGTCCTGACCGCTCTGGCCAAGGCAGGTACTA 1646 Query 17157 GCGGTACGCTGC---CCGCAAGCCTGCAAGCAATCGCCGACCAGGCCAACGCCGCCACTG 17213 ||| || ||| ||||| |||| || |||||| | | || | | | || Sbjct 1647 CCGGCACCTTGCGCCCCGCA---CTGCTGGCCATCGCCAATATTGTCAGCCCGAATATTG 1703 Query 17214 TGGTGGTGCGGGTGAAGCCGGG--CGAGGATGAAGCCGCGA--CCAATAGCGCGGTCATC 17269 |||||||||| ||| |||| | || | | || | | || |||| |||| | Sbjct 1704 TGGTGGTGCGCGTG--GCCGTGGACGCGCAA-AATCAG-GATGCCAA------GGTCTTG 1753 Query 17270 GG--CGGCGTCAGCGCCGATGGCAAGTACACCGGCATGAAGGCCTTGCTTGCCGCCAAGG 17327 || |||| ||||| | | | || ||||||||| |||| || | ||| ||| Sbjct 1754 GGTACGGC--CAGCGGCCCCGCC---TATACCGGCATGCAGGCGCTGTTGATGGCCGAGG 1808 Query 17328 CCCGCTTGGGCGTGGTACCGCGCATCCTCGGCGTGCCGGGCCTGGATACCCAGCCGGTCG 17387 || ||| | |||||||| || |||| |||||| |||||||| ||| || Sbjct 1809 CCAAGACGGGATCGCGCCCGCGCATTCTTGGCGCGCCGGGGCTGGATACGCAGGACGTAA 1868 Query 17388 CTACCGCACTCATCGCCATCGCCCAGCAACTGCGCGCCTTCGCTTATGTCTCCGCCAGCG 17447 | | || || ||||| | ||| ||| ||||||| ||| || |||| | ||| | | Sbjct 1869 CCAACGGCCTGATCGCGGTGGCCAAGCGCCTGCGCGGCTTTGCCTATGCCATGGCC-GAG 1927 Query 17448 GCTGCAAGACAAAGGAAGAGGCCACCGCCTACCGCGAGAACTTCGCCGCGCGCGAAGCCA 17507 | || | || || ||||||| |||||||||||| | |||| ||||||||| | Sbjct 1928 G--GCGAAACCCGCGACGAGGCCATCGCCTACCGCGATGAATTCGGGGCGCGCGAATTGA 1985 Query 17508 TGGTGATCTGGCC 17520 || |||||||||| Sbjct 1986 TGCTGATCTGGCC 1998 >seq1730 Length=1430 Score = 111 bits (122), Expect = 4e-20 Identities = 421/651 (65%), Gaps = 19/651 (3%) Strand=Plus/Minus Query 5325 CTTCGCCGTCGAGCCGAGTGTCCAGCAGAAGCTGGAGCAACGTATTCAGGAGTCCAGCGA 5384 |||| || | || || || || ||||||| ||||| || || ||||| ||| || Sbjct 1058 CTTCACCATTGAACCCAGCGTTCAGCAGACGCTGGTAACGCGCATGCAGGAAGCCATCGC 999 Query 5385 GTTCCTGAAGCAGATCAACGTC-TACGGCGTCGACGAGCTGCAGGGCGAGAAGATCGGCA 5443 ||||| | | |||||| | | | | || | | ||| ||||| |||| |||||| Sbjct 998 CTTCCTCAGCCGCATCAACATTGTCCCGGTTCCGCAA-CTGAAGGGCCAGAAAATCGGCC 940 Query 5444 TCGGCGTCNNNNNNACCATCGCCAGCCGTACCGATACCACTGGCGACGGTGTACGCAAGC 5503 | ||| |||||| |||| ||||| ||| | ||| || || |||| | Sbjct 939 TGACCGTGGGCGGTTCCATCGGCAGCAACACCGACACCGCCAGCGGCGATGAACGCGT-C 881 Query 5504 CGCGC-GACGTGTCCGCGCTCGACAACCAGCGTTACGAGTGCAAGCACACCGACTTCGAC 5562 || | ||| ||| ||| || ||||||| ||||| || | | |||||||| Sbjct 880 GGCACCGACCCCACCGGGCTGGATGCGTTCGGTTACGAATGCAACCAGAACAACTTCGAC 821 Query 5563 ACCGCAATCACCTACGCCATGCTCGACGCCTGGGCCAAGTTCCCCGAGTTCCAGGCCCTG 5622 |||| | |||||||| ||| ||| ||||| |||||||||| |||||| | | Sbjct 820 ACCGTTCTGCGCTACGCCAAGCTGGACATGTGGGCGCAGTTCCCCGACTTCCAGACGCGC 761 Query 5623 CTGCGCGACGCGATCCTCAAGCGCCAGGCCCTCGACCGCCTGATGATCGGCTTCAACGGC 5682 | || || || ||| | || ||||| || ||| | | | |||||||| ||| Sbjct 760 ATCCGTGATGCCTGCCTGATCCGTCAGGCGCTGGACACCATTTGCGTGGGCTTCAATGGC 701 Query 5683 ACCAGCGCCGCGGCTACCACCAACCGCGCCGCCAACCCGCTGCTGCAGGACGTGAACATT 5742 ||| | || |||||||||||| ||||||| |||||||| ||||| | || | Sbjct 700 ACCCACTATGCCAAGACCACCAACCGCACCGCCAATCCGCTGCTTCAGGATTTCAATCGT 641 Query 5743 GGCTGGTTCCAGCAGTACCGCAACAACGCTCCGGCACGGGTACTGAAGGAAGGGAAGACC 5802 |||||| | ||| | |||| || | || || | |||| | || | || || || Sbjct 640 GGCTGGCTTCAGGCGATCCGCGACGAAGCCCCCGAACGGCTCATGGATGA--GGTCGA-G 584 Query 5803 ACCGGCAAGGT----GGTA--GTCGGCAACGGCGCCGACGCCGACTACAAGAACCTCGAC 5856 ||||||||| || | ||| | | ||||| | | |||||| | | |||||| Sbjct 583 GGCGGCAAGGTGACGGGCAAGGTCACCTATGGCGCGGCGGGCGACTATGACAGTCTCGAC 524 Query 5857 GCCCTGGTGTTCGACGTGGTCAGCAGCCTGATCGATCCC---TGGCACCGCCGTGACCCG 5913 | ||||||| ||| | || | | | || ||| ||| | || || Sbjct 523 TCTCTGGTGTGGGAC--GCCAAGGAATC-GCTCATGCCCGAATGGGTGCAGGAAGATCCC 467 Query 5914 GGCCTGGTGGTGATCCTCGGCCGCGAGCTGGTCCACGACAAGTACTTCCCG 5964 | ||| || |||||| | |||||| ||||||| || |||||||| |||||| Sbjct 466 GACCTTGTCGTGATCGTGGGCCGCAAGCTGGTGCATGACAAGTATTTCCCG 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113731231501784