Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq910 98.7 4e-16 seq1032 84.2 8e-12 >seq910 Length=5863 Score = 98.7 bits (108), Expect = 4e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 44165 CTTGGCATCGAAGCCGGTCCCCTTTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGAT 44224 ||||| ||| ||||||| |||| |||||| |||| || |||||||||||||||||||| Sbjct 5521 CTTGGGGTCGTAGCCGGTGGCCTTGGCCTCGGCGTAAACGTCCTTGATGTCGTCGGCGAT 5462 Query 44225 GGTCTTCTTTTCTTCCTCCAAGCGTTCGATGCGGTGGAT 44263 | ||||||||| ||||||| || ||||| || | ||| Sbjct 5461 GCCCTTCTTTTCCTCCTCCAGCCGCTCGATCCGCTCGAT 5423 Score = 84.2 bits (92), Expect = 8e-12 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 51703 ATGCCCCGCTGGGCTTCGCGCCTTACCCTGATCGTGACCGACGTTCGCGTCGAGCGCCTG 51762 |||||||||||||| |||||||| || |||| | ||||| || ||||| ||||| || Sbjct 854 ATGCCCCGCTGGGCCTCGCGCCTGACGCTGACTATCACCGATGTGCGCGTGGAGCGGTTG 913 Query 51763 CAGGATATCAGCGAGGCCGACGCAATCGCCGAGGGC 51798 ||||| ||||||| || || || | ||||||||| Sbjct 914 CAGGACATCAGCGCAGCGGATGCCTTGGCCGAGGGC 949 >seq1032 Length=4102 Score = 84.2 bits (92), Expect = 8e-12 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 44070 ATGCCGAGCGCTGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGGTG 44129 ||||| || || |||||| || ||||| || || || ||| | || ||||| | Sbjct 1859 ATGCCCAGAGCGTTGAGGTAAACCTCCAGGATCGCTTCCTGTTCCTTGCGGTCGTCAGGC 1800 Query 44130 TCCTGCTTGCGCA-GCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCTT 44188 | | |||||| | ||| || ||||| | || ||||| || ||||||| |||| Sbjct 1799 TTCATCTTGCGGATGCG-GACCACCTGCTTCATCGCCTTGGGGTCATAGCCGGTGGCCTT 1741 Query 44189 TGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAGCG 44248 ||||| || || ||||||||||||||| |||| |||||||||||| |||| || Sbjct 1740 GCCCTCGTTATAGACGTCCTTGATGTCGTCGCTGATGCCCTTCTTTTCTTCTTCCAGACG 1681 Query 44249 TTCGATGCGGTGGAT 44263 ||||| || | ||| Sbjct 1680 CTCGATACGCTCGAT 1666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183604484866056