Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq454 102 8e-17 seq56 86.0 6e-12 >seq454 Length=44262 Score = 102 bits (112), Expect = 8e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | |||||||||||||| || || || |||| ||||||||| || Sbjct 41494 CCTCCTCTTAATCTCAAAACTAAGTGAAGTGTTGATTCCTTTTAAATGTTATAGTCTGAA 41553 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || |||||| | | ||| || ||| |||| || | ||| | |||||| || Sbjct 41554 AGTGTTCTTCCGTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTGTTAATCGGGTGGG 41613 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| |||||| ||| | || | |||||| | || || || Sbjct 41614 ATTCCTTCCTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCAGATGGTTCAACA 41673 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTAT 139771 |||| || | ||||| || || | || |||||||| |||| ||| | |||| Sbjct 41674 TCAAGAGTAATTGTCTTTCCTGTGAGTGTCTTTACGAAAATTTACATTGTTTAT 41727 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| ||| | |||||||||||||| || || || |||| ||||||||| || Sbjct 41037 GCCTCCTCTTAATCTCAAAACTAAGTGAAGTGTTGATTCCTTTTAAATGTTATAGTCTGA 41096 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| || |||||| | | ||| || ||| |||| || | || | |||||| || Sbjct 41097 AAGTGTTCTTCCGTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTATTAATCGGGTGG 41156 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| |||||| ||| | || | |||||| | || || || Sbjct 41157 GATTCCTTCCTTGTCTTAGATTTTGGCTTTGACAGCATCAATTGTGTCAGATGGTTCAAC 41216 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || || | || || || || |||| ||| Sbjct 41217 ATCAAGAGTAATTGTCTTTCCTGTGAGTGTCTTGACAAAGATTTACAT 41264 >seq56 Length=265680 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||| ||||| |||| || || ||||||| |||||||||||| Sbjct 113496 CCTCCTCTTAATCTCAATACTAAATGAAGAGTTGATTCTTTTTAAATGTTATAATCTGAA 113437 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || || || || ||| | |||| | || ||||| ||||| Sbjct 113436 AGAGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGAGGA 113377 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG-TTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || | | | || | ||| | | || | ||||| | || || || Sbjct 113376 ATTCCTTCTTTATC-TTAAATCTTAGCCTTAACAGCATCAATGGTGTCTGAAGGTTCTAC 113318 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | ||||| || ||||| ||||| || || |||| |||| Sbjct 113317 ATCAAGTGTGATAGTCTTTCCCGTCAAGGTTTTAACAAAAATTTACATA 113269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496049452923200