Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq253 336 2e-87 seq25 325 4e-84 >seq253 Length=82967 Score = 336 bits (372), Expect = 2e-87 Identities = 580/834 (70%), Gaps = 19/834 (2%) Strand=Plus/Minus Query 13525 AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13584 |||| ||| |||| | | ||| || ||||| | ||| ||| || || || ||||| Sbjct 29973 AAAAGTCAGCATCCATAGTAAATACTTTATCCTATTTTTTACTCATGACTCCAGCTTTTT 29914 Query 13585 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13644 ||| || | ||||||| |||| || || ||||||||||||| | ||||| | |||| Sbjct 29913 AATAATCTCCAACTCTTCTTTCGAAAAAATTAGTTTTACCTTGTAAAGATATCATATCCA 29854 Query 13645 TAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 13704 | | ||||| ||||| |||| || | | |||| | |||| | | |||| ||||| Sbjct 29853 TCCATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCAAATATTAATC 29794 Query 13705 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13764 |||| |||| ||| |||||||||| ||| | || | |||||||||| |||| || || Sbjct 29793 TATCTGCAACAAATTCAATATATTATTTCATCATATTAGAATTCATACCAATTAATTCTA 29734 Query 13765 CAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 | | | | || ||| |||||||||||| || ||||| | ||| ||| Sbjct 29733 CTGATAA-AGCTTCACTAATAAATTCTTTTTCAATTTCAACAGCAGATGA---AATTATT 29678 Query 13824 GTAATAATCTCATTAG--AAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGCAAA 13879 | ||| || ||| | | |||| ||| |||||| ||| || ||| || || Sbjct 29677 TCATGAAT-TCTTTAATTACTTAATTTATTGATTAAATGTTTGTAAAGTAGACAAGCGAA 29619 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 || |||||| || |||||||| ||| | ||| ||||||||||| | ||| ||||| Sbjct 29618 GTCTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTGAGTCCAGGCAT 29559 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 |||| || |||||||| ||| || || ||| |||||| || ||||||||||| || || Sbjct 29558 CAATGATCTTTTTTTTATCCAGAAAATGGCACAAAATGAACCAGAAAAGAATATACCTTC 29499 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 ||| | |||||| || ||||||| ||| |||| || | || | || |||||||| Sbjct 29498 AACAGAAGCAAAAGCAATTAATCTTTCAGCAAATGAATCATTATCATT---AATCCATTT 29442 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 ||||||| | || |||| |||| | || | |||||||||| || || ||| Sbjct 29441 CATAGCCCACATTGCCTTCTTTTGTATAACAGGCACATTATCAATAGCATGAAGTAGATA 29382 Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 | || || || | | ||||| |||||||| | || ||| |||| || || Sbjct 29381 ATTTTTTTCATTTTCATCAGTTATGTAAGTATCAATCAATAGTGAATAGGTTTCTGAATG 29322 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 || || |||||||||| || ||| ||||| || ||||||||||| | || ||||| Sbjct 29321 AATATTCTCCATAGCTAACTAAAATCCATAGAAACATCTAGCTTCTGGAACTTAAACTTC 29262 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299 | ||||| || ||||| |||||||| || |||||||||||||||||||| || || Sbjct 29261 TGTACAAAATTATTAAGCCAAGTTTTCATTCACAATACCATCACTAGCTGCAAAGAAGGC 29202 Query 14300 CAATATGTTTTTAATAAAGTATTGCTCTTCAT---TGTTGAGTTTTTTCCAATC 14350 | || | ||||||| | |||| ||||| | | ||||||| |||||| Sbjct 29201 AAGTACATACTTAATAA---AATGCTTTTCATCTGAGGTAAGTTTTTCCCAATC 29151 >seq25 Length=399112 Score = 325 bits (360), Expect = 4e-84 Identities = 578/836 (69%), Gaps = 23/836 (3%) Strand=Plus/Minus Query 13525 AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13584 |||| ||| |||| | | ||| || ||||| | ||| ||| ||||| || ||||| Sbjct 189061 AAAAGTCAGCATCCATAGTAAATACTTTATCTTATTTTTTACTCATAACTCCAGCTTTTT 189002 Query 13585 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13644 | || || | ||||||| |||| ||||| ||||||||||||| | || || | |||| Sbjct 189001 GGTAATCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGAGATCATATCCA 188942 Query 13645 TAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 13704 | | ||||| ||||| |||| || | | |||| | |||| | | |||| ||||| Sbjct 188941 TCCATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCAAATATTAATC 188882 Query 13705 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13764 |||| || | ||| |||||||||| |||||||| | ||||||| || |||| || | Sbjct 188881 TATCTGCTACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAATTCAA 188822 Query 13765 CAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTG 13824 | || | | | | |||||||||||| || ||||| | ||||||| Sbjct 188821 CTGGTAGAGCTTCACTGATAAATTCTTTTTCAATTTCAACAGCAGATGA---AATAATTT 188765 Query 13825 TAATAATCTCATTAG--AAGGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAAA 13880 | ||| || ||| | | |||| || |||||| ||| | ||| || || Sbjct 188764 CATGAAT-TCGTTAATTACTTAATTTATTAACTAAATGTTTGTAAAGAAGACAAGCGAAG 188706 Query 13881 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13940 || |||||| || |||||||| ||| | ||| |||||||| || | ||| |||||| Sbjct 188705 TCTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCAGGCATC 188646 Query 13941 AATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCA 14000 ||| || |||||| | ||||||||| ||| |||||| || |||||||| || || ||| Sbjct 188645 AATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAAATGCCTTCA 188586 Query 14001 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14060 || | |||||| || ||||||| ||| |||| || | || || || |||||||| Sbjct 188585 ACAGAAGCAAAGGCAATTAATCTTTCAGCAAATGAATCATTATTATTA---ATCCATTTC 188529 Query 14061 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATAT 14120 | ||||| | ||| |||| ||| | | || | || ||||||| | | ||| Sbjct 188528 ATTGCCCACATTGCTTTCTTTTAAATTACAGGCACATTATCTATAGCATGGAGAAGATAG 188469 Query 14121 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT---AAGTAAGCTATACATTTCAGAG 14177 | || || || | | || || |||||||| |||| | ||| ||||||| Sbjct 188468 TTTTTTTCATTTTCATCAGTTATATAGGTATCAATCAAAAGTGA---ATATGTTTCAGAA 188412 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACT 14237 || || || |||||||| || | ||| |||||||| ||||||||||| | ||||||| Sbjct 188411 TGAATATTCTCCATAGCCATTTAAAATCCATAAAAACATCTAGCTTCAGGAACTTGTACT 188352 Query 14238 TCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14297 || | | ||| || ||||| |||||||| |||||||||||||| |||||||| || Sbjct 188351 TCTGTACAGAATTATTAAGCCAAGTTTTCATTTACTATACCATCACTTGCTGCAAAGAAA 188292 Query 14298 GCCAATATGTTTTTAATAAAGTATTGCTCTTCAT---TGTTGAGTTTTTTCCAATC 14350 || | | | ||||||||| |||| ||||| | ||||||||| |||||| Sbjct 188291 GCAAGGACATACTTAATAAAG---TGCTTTTCATCTGAGGTGAGTTTTTCCCAATC 188239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479713931976400