Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq253 324 1e-83 seq25 307 1e-78 >seq253 Length=82967 Score = 324 bits (358), Expect = 1e-83 Identities = 576/833 (69%), Gaps = 17/833 (2%) Strand=Plus/Minus Query 13313 aaaaaTCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13372 |||| ||| |||| | | ||| || ||||| | ||| ||| || || || ||||| Sbjct 29973 AAAAGTCAGCATCCATAGTAAATACTTTATCCTATTTTTTACTCATGACTCCAGCTTTTT 29914 Query 13373 GATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13432 ||| || | ||||||| |||| ||||| ||||||||||||| | ||||| | |||| Sbjct 29913 AATAATCTCCAACTCTTCTTTCGAAAAAATTAGTTTTACCTTGTAAAGATATCATATCCA 29854 Query 13433 TAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATC 13492 | | || || ||||| |||| || | | |||| | |||| | | |||| ||||| Sbjct 29853 TCCATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCAAATATTAATC 29794 Query 13493 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13552 |||| |||| ||| |||||||||| ||| | || | |||||||||| |||| || || Sbjct 29793 TATCTGCAACAAATTCAATATATTATTTCATCATATTAGAATTCATACCAATTAATTCTA 29734 Query 13553 CAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612 | | | | | | | |||||||||||| || ||||| | | | ||| || | Sbjct 29733 CTGATAAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGCA--GATGA-AATTATTT 29677 Query 13613 TAATAATGTCATTAG--AAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGCAAAA 13668 | ||| || ||| | | |||| ||| |||||| ||| || ||| || || Sbjct 29676 CATGAAT-TCTTTAATTACTTAATTTATTGATTAAATGTTTGTAAAGTAGACAAGCGAAG 29618 Query 13669 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13728 || |||||| || |||||||| ||| | ||| ||||||||||| | ||| |||||| Sbjct 29617 TCTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTGAGTCCAGGCATC 29558 Query 13729 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 13788 ||| || |||||||| ||| || || ||| ||||| || ||||||||||| || ||| Sbjct 29557 AATGATCTTTTTTTTATCCAGAAAATGGCACAAAATGAACCAGAAAAGAATATACCTTCA 29498 Query 13789 ACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTT 13848 || | |||||| || |||| || ||| |||| || | || | || |||||||| Sbjct 29497 ACAGAAGCAAAAGCAATTAATCTTTCAGCAAATGAATCATTATCATTA---ATCCATTTC 29441 Query 13849 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGT 13908 ||||||| | || |||| |||| | || | || || |||| | || || Sbjct 29440 ATAGCCCACATTGCCTTCTTTTGTATAACAGGCACATTATCAATAGCATGAAGTAGATAA 29381 Query 13909 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 13968 | || || || | | ||||| |||||||| | || ||| |||| || || Sbjct 29380 TTTTTTTCATTTTCATCAGTTATGTAAGTATCAATCAATAGTGAATAGGTTTCTGAATGA 29321 Query 13969 ATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC 14028 || || || ||||||| || ||| ||||| |||||||||||||||| || || || Sbjct 29320 ATATTCTCCATAGCTAACTAAAATCCATAGAAACATCTAGCTTCTGGAACTTAAACTTCT 29261 Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC 14088 | ||||| || |||||||||||||| ||||||||||||||||||||||| || || Sbjct 29260 GTACAAAATTATTAAGCCAAGTTTTCATTCACAATACCATCACTAGCTGCAAAGAAGGCA 29201 Query 14089 AATATGTTTTTAATAAAGTATTGCTCTTCAT---TGTTGAGTTTTTTCCAATC 14138 | || | ||||||| | |||| ||||| | | ||||||| |||||| Sbjct 29200 AGTACATACTTAATAA---AATGCTTTTCATCTGAGGTAAGTTTTTCCCAATC 29151 >seq25 Length=399112 Score = 307 bits (340), Expect = 1e-78 Identities = 575/836 (69%), Gaps = 23/836 (3%) Strand=Plus/Minus Query 13313 aaaaaTCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13372 |||| ||| |||| | | ||| || ||||| | ||| ||| ||||| || ||||| Sbjct 189061 AAAAGTCAGCATCCATAGTAAATACTTTATCTTATTTTTTACTCATAACTCCAGCTTTTT 189002 Query 13373 GATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13432 | || || | ||||||| |||| || || ||||||||||||| | || || | |||| Sbjct 189001 GGTAATCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGAGATCATATCCA 188942 Query 13433 TAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATC 13492 | | || || ||||| |||| || | | |||| | |||| | | |||| ||||| Sbjct 188941 TCCATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCAAATATTAATC 188882 Query 13493 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13552 |||| || | ||| |||||||||| |||||||| | ||||||| || |||| || | Sbjct 188881 TATCTGCTACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAATTCAA 188822 Query 13553 CAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612 | || | | | | | |||||||||||| || ||||| | | | |||||| | Sbjct 188821 CTGGTAGAGCTTCACTGATAAATTCTTTTTCAATTTCAACAGCA--GATGA-AATAATTT 188765 Query 13613 TAATAATGTCATTAG--AAGGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAAA 13668 | ||| || ||| | | |||| || |||||| ||| | ||| || || Sbjct 188764 CATGAAT-TCGTTAATTACTTAATTTATTAACTAAATGTTTGTAAAGAAGACAAGCGAAG 188706 Query 13669 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13728 || |||||| || |||||||| ||| | ||| |||||||| || | ||| |||||| Sbjct 188705 TCTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCAGGCATC 188646 Query 13729 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 13788 ||| || |||||| | ||||||||| ||| ||||| || |||||||| || || ||| Sbjct 188645 AATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAAATGCCTTCA 188586 Query 13789 ACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTT 13848 || | |||||| || |||| || ||| |||| || | || || || |||||||| Sbjct 188585 ACAGAAGCAAAGGCAATTAATCTTTCAGCAAATGAATCATTATTATTA---ATCCATTTC 188529 Query 13849 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGT 13908 | ||||| | ||| |||| ||| | | || | || || |||| || | || Sbjct 188528 ATTGCCCACATTGCTTTCTTTTAAATTACAGGCACATTATCTATAGCATGGAGAAGATAG 188469 Query 13909 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT---AAGTAAGCTATACATTTCAGAG 13965 | || || || | | || || |||||||| |||| | ||| ||||||| Sbjct 188468 TTTTTTTCATTTTCATCAGTTATATAGGTATCAATCAAAAGTGA---ATATGTTTCAGAA 188412 Query 13966 TGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACC 14025 || || || || ||||| || | ||| |||||||||||||||||||| | |||||| Sbjct 188411 TGAATATTCTCCATAGCCATTTAAAATCCATAAAAACATCTAGCTTCAGGAACTTGTACT 188352 Query 14026 TCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAAT 14085 || | | ||| || |||||||||||||| || ||||||||||| |||||||| || Sbjct 188351 TCTGTACAGAATTATTAAGCCAAGTTTTCATTTACTATACCATCACTTGCTGCAAAGAAA 188292 Query 14086 GCCAATATGTTTTTAATAAAGTATTGCTCTTCAT---TGTTGAGTTTTTTCCAATC 14138 || | | | ||||||||| |||| ||||| | ||||||||| |||||| Sbjct 188291 GCAAGGACATACTTAATAAAG---TGCTTTTCATCTGAGGTGAGTTTTTCCCAATC 188239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478574765383440