Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq128 82.4 6e-11 >seq128 Length=150569 Score = 82.4 bits (90), Expect = 6e-11 Identities = 163/239 (68%), Gaps = 13/239 (5%) Strand=Plus/Minus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 |||||||| || ||||||| ||| || |||| | ||| ||||| || | || | | Sbjct 58053 AGTCTTAATACTAAATGGAGAGTTGATTCTTTTTAAATATTATAATCTGAAAGAGTTCTT 57994 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || || | ||| || || ||||||||||||| | || ||| | || | |||||| Sbjct 57993 CCATCTTCGAGTTGCTTTCCTGCAAAAATCAATCTTTATTAATCAGGTGGAATTCCTTCT 57934 Query 43012 TTTTCGCTGATCAACTCTTTGACT---CTGC--CAACTGTGTCGCCAGCCTCGACGTCTA 43066 || || | || |||| | || | || ||| ||| || || ||| || || | Sbjct 57933 TTATC-----TTAAATCTTAGCCTTAACAGCATCAATTGTATCTGAAGGCTCTACATCAA 57879 Query 43067 CCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT---AATTTTA 43122 || || || ||||| || || ||||| |||||||||| ||| || || ||||||| Sbjct 57878 GAGTGATGGTCTTTCCCGTCAGGGTTTTAACAAAAATTTACATATTATTTTAAATTTTA 57820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381358695928068