Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq114 98.7 1e-15 >seq114 Length=165420 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | |||||||||||| | || ||||| |||| ||||| ||||| Sbjct 164283 CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAA 164342 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | || ||| || ||| | || || | || | ||| || || Sbjct 164343 AGTGTTCTTCCATCTTCTAATTATTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 164402 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| |||| | || | | || | ||||| | ||||| || Sbjct 164403 ATTCCTTCCTTGTC-TTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAAC 164461 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || || ||||||||||| ||||||| ||| Sbjct 164462 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 164509 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | |||||||||||| | || ||||| |||| ||||| ||||| Sbjct 163562 CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAA 163621 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 163622 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 163681 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| |||| | || | | || | ||||| | ||||| || Sbjct 163682 ATTCCTTCCTTGTC-TTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAAC 163740 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTA 143190 |||| ||| | || || ||||| |||||||| || || |||||||||| ||| Sbjct 163741 ATCAAGAGTGATGGTTTTACCGGTTAATGTTTTAACAAAAATTTGCATAGTTTA 163794 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | |||||||||||| | || ||||| |||| || || ||||| Sbjct 153364 CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATATTATAATCTGAA 153305 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 153304 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGA 153245 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||| |||| | || | | || | ||||| | |||||||| Sbjct 153244 ATTCCTTCTTTGTC-TTAAATTTTAGCCTTGACAGCATCTATAGTGTCTGATGGTTCTAC 153186 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTT 143189 |||| ||| | || || || || |||||||| || || |||| ||||| || Sbjct 153185 ATCAAGAGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTACATAGTTT 153133 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| || | ||| ||||| || | || ||||| |||| ||||| ||||| Sbjct 165079 GCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAATCTGA 165138 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| || ||||| | || ||| || ||| | || || | || | ||| || || Sbjct 165139 AAGTGTTCTTCCATCTTCTAATTATTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 165198 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTA 143135 || ||||| ||||| ||| |||| | || | | || | ||||| | ||||| | Sbjct 165199 GATTCCTTCCTTGTCT-TAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAA 165257 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | |||| ||| | ||||| || || ||||||||||| ||||||| ||| Sbjct 165258 CATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 165306 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | |||||||||||| | || ||||| |||| || || ||||| Sbjct 139733 CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATATTATAATCTGAA 139674 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 139673 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 139614 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||| |||| | || | | || | ||||| | ||||| || Sbjct 139613 ATTCCTTCCTTATC-TTAAATTTTAGCCTTGACAGCGTCAATGGTGTCTGATGGTTCAAC 139555 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | ||||| || || |||||||| || || ||||||||| Sbjct 139554 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTAACAAAAATTTGCATA 139506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506999531802720