Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq1730 122 2e-23 seq1104 82.4 1e-11 >seq1730 Length=1430 Score = 122 bits (134), Expect = 2e-23 Identities = 535/821 (65%), Gaps = 43/821 (5%) Strand=Plus/Minus Query 4172 TTCACCGTTGAACCGT-CGGTCACCCAGACCCTGATGAACAC-CATGCAGGAGTCCTCTG 4229 |||||| ||||||| || ||| | |||| ||| | ||| | ||||||||| || | Sbjct 1057 TTCACCATTGAACCCAGCGTTCAGC-AGACGCTGGT-AACGCGCATGCAGGAAGCCATCG 1000 Query 4230 ATTTCCTGACCCGCATCAACATTGTGCCGGT-CAGCGAAATGAAAGGGGAAAAAATTGGC 4288 ||||| | ||||||||||||||| ||||| | || || |||| || | ||||| ||| Sbjct 999 CCTTCCTCAGCCGCATCAACATTGTCCCGGTTCCGC-AACTGAAGGGCCAGAAAATCGGC 941 Query 4289 ATCGGTGTCACCGGCTCCATCGCCAGCACCACCGACACCGCCGGTGGCACCGA--GCGTC 4346 | || ||| ||||||| ||||| ||||||||||||| | ||| || ||||| Sbjct 940 CTGACCGTGGGCGGTTCCATCGGCAGCAACACCGACACCGCCAGCGGCGATGAACGCGTC 881 Query 4347 AGCCGAAGGACTTCTCGAAGCTGGCGTCAAACAAGTACGAATGCGACCAGATTAACTTCG 4406 || | ||| | | ||||| | | ||||||||| |||||| ||||||| Sbjct 880 GGC--ACCGACCCCACCGGGCTGGATGCGTTCGGTTACGAATGCAACCAGAACAACTTCG 823 Query 4407 ATTTTTATATCCGCTACAAAACGCTTGACCTGTGGGCGCGTTATCAGGATTTCCAGCTCC 4466 | | | |||||| | ||| ||| ||||||||| | | || |||||| | Sbjct 822 ACACCGTTCTGCGCTACGCCAAGCTGGACATGTGGGCGCAGTTCCCCGACTTCCAGACGC 763 Query 4467 GTGTCCGTAACGCCATTATCAAACGCCAGTCCCTTGATTTCATCATGGCCGGTTTTAACG 4526 | ||||| | ||| | | || ||| | || || ||| | || || || | Sbjct 762 GCATCCGTGATGCCTGCCTGATCCGTCAGGCGCTGGACACCATTTGCGTGGGCTTCAATG 703 Query 4527 GCGTGAAGCGTGCCGAAACCTCTGACCGCAGCAGCAATCCGATGCTGCAGGATGTGGCGG 4586 || | |||| | ||| | |||||| | ||||||| |||| |||||| | | Sbjct 702 GCACCCACTATGCCAAGACCACCAACCGCACCGCCAATCCGCTGCTTCAGGATTT--CAA 645 Query 4587 TCG--GCTGGCTGCAGAAATACCGCAATGAAGCCCCGGCGCGCGTGATGAGCAAGGTCAC 4644 ||| ||||||| ||| |||| | |||||||| | || | ||| ||||| Sbjct 644 TCGTGGCTGGCTTCAGGCGATCCGCGACGAAGCCCCCGAACGGCTCATGGATGAGGTCGA 585 Query 4645 TGACGAGGAAGGGCACAC-CACCTCTGAGGTCATCC---GCGTGGGTAAGGGCGGTGATT 4700 | || | |||| || || |||||| | ||| || ||||| | | Sbjct 584 GGGCG-GCAAGGTGACGGGCA------AGGTCACCTATGGCGCGGC---GGGCG---ACT 538 Query 4701 ATGCCAGCCTCGATGCACTGGTGATGGATGCGACCAACAATCTGATTGAGCCG---TGGT 4757 ||| ||| ||||| | |||||| ||| || | | |||| | | ||| ||| Sbjct 537 ATGACAGTCTCGACTCTCTGGTGTGGGACGCCA--AGGAATC-GCTCATGCCCGAATGGG 481 Query 4758 ATCAGGAAGACCCTGACCTTGTGGTGATTGTGGGGCGTCAGCTGCTGGCGGACAAATATT 4817 |||||||| || |||||||| ||||| ||||| || ||||| || ||||| |||| Sbjct 480 TGCAGGAAGATCCCGACCTTGTCGTGATCGTGGGCCGCAAGCTGGTGCATGACAAGTATT 421 Query 4818 TCCCCATCGTCAACAAGGAGC-AGGACAACAGCGAAATGCTGGCCGCTGACGTCATCATC 4876 |||| || ||||| | | | | | || | ||||||| |||| | | | ||||| Sbjct 420 TCCCGCTCATCAACC-GCACCGAAGGCAGCCTCGAAATGATGGCGCGTCAGGCAATCATG 362 Query 4877 AGCCAGAAACGCATC--GGTAACCTGCCGGCGGTACGCGTCCCGTACTTCCCGGCGGATG 4934 ||| || | || | || |||||||| || |||||||| |||||||||||| | Sbjct 361 -GCC-GACATTCAGCTGGGCGGCCTGCCGGTGGAGCGCGTCCCCTACTTCCCGGCGAAGT 304 Query 4935 CGATGCTCATCACGAAGCTGGAAAACCTGTCCATCTACTAC 4975 | | |||||||| ||| |||||||| | |||||| Sbjct 303 CCTTCCTCATCACCAAGTATTCGAACCTGTCGAAATACTAC 263 >seq1104 Length=3343 Score = 82.4 bits (90), Expect = 1e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 17096 GCGCTGGGTCTGCGCGCTAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAAC 17155 |||||||| |||||||| | ||||||||| ||||||||| |||||| | ||||| Sbjct 2036 GCGCTGGGCCTGCGCGCCTATATCGACCAGACCGTGGGCTGGCACAAAACGATTTCCAAT 2095 Query 17156 GTCGGGGTGAACGGTGTTACCGGCATCAGTGCA--TCCGTCTTCTGGGATTTGCA-GAAG 17212 || | | | | ||| ||||||||||| | || ||| | ||||| || | || | Sbjct 2096 GTGGTGATTACCGGCGTTACCGGCAT--GGCCAAGGACGTGTCCTGGGCGATGGATGATG 2153 Query 17213 CCAGGCACTGATGCTGACCTGCTGAACGAGGCAGGCGTCACAACGCTGGTTCGCCGCGAC 17272 || ||| || || | ||||||||||| |||| | |||| |||||| | | | || Sbjct 2154 ACA-CCACCGACGCGGCCCTGCTGAACGCGGCAAACATCACCACGCTGATCTGTTACAAC 2212 Query 17273 GGTTTTCGTTTCTGGGGTAA 17292 || | ||| || ||||| || Sbjct 2213 GGCTATCGGTTTTGGGGCAA 2232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98205264047880