Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq1730 100 6e-17 seq1104 86.0 1e-12 >seq1730 Length=1430 Score = 100 bits (110), Expect = 6e-17 Identities = 523/815 (64%), Gaps = 31/815 (4%) Strand=Plus/Minus Query 4171 TTCACCGTTGAACCGT-CGGTCACCCAGACCCTGATGAACAC-CATGCAGGAGTCCTCTG 4228 |||||| ||||||| || ||| | |||| ||| | ||| | ||||||||| || | Sbjct 1057 TTCACCATTGAACCCAGCGTTCAGC-AGACGCTGGT-AACGCGCATGCAGGAAGCCATCG 1000 Query 4229 ACTTTCTGACCCGGATCAACATTGTGCCGGT-CAGCGAAATGAAAGGGGAAAAAATTGGT 4287 ||| || | ||| ||||||||||| ||||| | || || |||| || | ||||| || Sbjct 999 CCTTCCTCAGCCGCATCAACATTGTCCCGGTTCCGC-AACTGAAGGGCCAGAAAATCGGC 941 Query 4288 ATTGGTGTCACCGGCTCCATCGCCAGCACCACCGACACCGCCGGTGGCACCGA--GCGTC 4345 | || ||| ||||||| ||||| ||||||||||||| | ||| || ||||| Sbjct 940 CTGACCGTGGGCGGTTCCATCGGCAGCAACACCGACACCGCCAGCGGCGATGAACGCGTC 881 Query 4346 AGCCGAAGGACTTCTCGAAGCTGGCGTCAAACAAGTACGAATGCGACCAGATTAACTTCG 4405 || | ||| | | ||||| | | ||||||||| |||||| ||||||| Sbjct 880 GGC--ACCGACCCCACCGGGCTGGATGCGTTCGGTTACGAATGCAACCAGAACAACTTCG 823 Query 4406 ATTTTTATATCCGCTACAAAACGCTGGACCTGTGGGCGCGTTATCAGGATTTCCAGCTCC 4465 | | | |||||| | ||||||| ||||||||| | | || |||||| | Sbjct 822 ACACCGTTCTGCGCTACGCCAAGCTGGACATGTGGGCGCAGTTCCCCGACTTCCAGACGC 763 Query 4466 GTGTCCGTAACGCCATTATCAAACGCCAGTCCCTTGATTTAATCATGGCCGGTTTTAACG 4525 | ||||| | ||| | | || ||| | || || || | || || || | Sbjct 762 GCATCCGTGATGCCTGCCTGATCCGTCAGGCGCTGGACACCATTTGCGTGGGCTTCAATG 703 Query 4526 GCGTGAGGCGTGCCGAAACCTCTGACCGCAGCAGTAACCAGATGCTGCAGGATGTGGCGG 4585 || |||| | ||| | |||||| | || | | |||| |||||| | | Sbjct 702 GCACCCACTATGCCAAGACCACCAACCGCACCGCCAATCCGCTGCTTCAGGATTT--CAA 645 Query 4586 TCG--GCTGGCTGCAGAAATACCGCAATGAAGCCCCGGCGCGCGTGATGAGCAAGGTCAC 4643 ||| ||||||| ||| |||| | |||||||| | || | ||| ||||| Sbjct 644 TCGTGGCTGGCTTCAGGCGATCCGCGACGAAGCCCCCGAACGGCTCATGGATGAGGTCGA 585 Query 4644 TGACGAGGAAGGTCACACGACCTCTGAGGTCATCCGCGTGGGTAAGGGGGGTGATTATGC 4703 | || | ||||| || | |||||| | | | || ||| || |||| Sbjct 584 GGGCG-GCAAGGTGACGGGCA-----AGGTCACCTATGGCGC---GGCGGGCGACTATGA 534 Query 4704 CAGCCTCGATGCACTGGTGATGGATGCGACCAACAACCTGATTGAGCCG--TGGTATCAG 4761 ||| ||||| | |||||| ||| || | | || || ||| ||| ||| Sbjct 533 CAGTCTCGACTCTCTGGTGTGGGACGCCAAGGAATCGCTCATGC--CCGAATGGGTGCAG 476 Query 4762 GAAGACCCTGACCTTGTGGTGATTGTGGGGCGTCAGCTGCTGGCGGACAAATATTTCCCC 4821 ||||| || |||||||| ||||| ||||| || ||||| || ||||| |||||||| Sbjct 475 GAAGATCCCGACCTTGTCGTGATCGTGGGCCGCAAGCTGGTGCATGACAAGTATTTCCCG 416 Query 4822 ATCGTCAACAGGGAGCAGGACAACAGCGAAATGCTGGCCGCTGACGTCATCATCAGCCAG 4881 || ||||| | | | || | ||||||| |||| | | | ||||| ||| | Sbjct 415 CTCATCAACCGCACCGAAGGCAGCCTCGAAATGATGGCGCGTCAGGCAATCATG-GCC-G 358 Query 4882 AAACGCATC--GGTAACCTGCCGGCGGTACGCGTCCCGTACTTCCCGGCGGATGCGATGC 4939 | | || | || |||||||| || |||||||| |||||||||||| | | | | Sbjct 357 ACATTCAGCTGGGCGGCCTGCCGGTGGAGCGCGTCCCCTACTTCCCGGCGAAGTCCTTCC 298 Query 4940 TCATCACGAAGCTGGAAAACCTGTCCATCTACTAC 4974 ||||||| ||| |||||||| | |||||| Sbjct 297 TCATCACCAAGTATTCGAACCTGTCGAAATACTAC 263 >seq1104 Length=3343 Score = 86.0 bits (94), Expect = 1e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 16466 GCGCTGGGTCTGCGCGCTAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAAC 16525 |||||||| |||||||| | ||||||||| ||||||||| |||||| | ||||| Sbjct 2036 GCGCTGGGCCTGCGCGCCTATATCGACCAGACCGTGGGCTGGCACAAAACGATTTCCAAT 2095 Query 16526 GTCGGGGTGAACGGTGTTACCGGCATCAGCGCGTCCGTATTCTGGGATTTGCAGGAGTCC 16585 || | | | | ||| ||||||||||| | | ||| | ||||| || | || | Sbjct 2096 GTGGTGATTACCGGCGTTACCGGCATGGCCAAGGACGTGTCCTGGGCGATGGATGATGAC 2155 Query 16586 GGCACCGATGCTGACCTGCTTAACGAGTCAGGCGTCACAACGCTGAT 16632 |||||| || | |||||| |||| | || | |||| |||||||| Sbjct 2156 ACCACCGACGCGGCCCTGCTGAACGCGGCAAACATCACCACGCTGAT 2202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104464289674392