Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq253 304 1e-77 seq25 302 4e-77 >seq253 Length=82967 Score = 304 bits (336), Expect = 1e-77 Identities = 524/753 (70%), Gaps = 15/753 (2%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||||| ||| || | ||||||| |||| ||||| || ||||| |||| ||| || || | Sbjct 29918 TTTTTAATAATCTCCAACTCTTCTTTCGAAAAAATTAGTTTTACCTTGTAAAGATATCAT 29859 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| | || |||||||| || ||| ||| ||| | |||||| | | || Sbjct 29858 ATCCATCCATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCAAATAT 29799 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 ||||| || |||||||| || || || | |||||| | || | | ||||| || ||||| Sbjct 29798 TAATCTATCTGCAACAAATTCAATATATTATTTCATCATATTAGAATTCATACCAATTAA 29739 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGAT--AACT 13096 || ||| | | |||||| | | ||| | |||||| || ||||| || ||| || | Sbjct 29738 TTCTACTGATAAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGCA--GATGAAATT 29681 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT-AGATGCTTAAACATCATACATGC 13155 || || ||| | || || | | ||||| | ||| || | | | ||| || Sbjct 29680 ATTTCATGAATT-CTTTAATTACTTAATTTATTGATTAAATGTTTGTAAAGTAGACAAGC 29622 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 || || || | ||||||||||| |||| || ||||||||||| || || || Sbjct 29621 GAAGTCTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTGAGTCCAGG 29562 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275 ||| | || |||||| ||||| || || ||| ||| ||||| ||||| ||||| || Sbjct 29561 CATCAATGATCTTTTTTTTATCCAGAAAATGGCACAAAATGAACCAGAAAAGAATATACC 29502 Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCA 13335 |||||| | ||||| || || || |||||| || | | | ||| | | | ||||| Sbjct 29501 TTCAACAGAAGCAAAAGCAATTAATCTTTCAGCAAATGAATCATTATCATTA---ATCCA 29445 Query 13336 CTTTCTGGCCCAGTTTGCTTT---TTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAA 13392 || | ||||| |||| || |||| |||| || || ||| || || || | || Sbjct 29444 TTTCATAGCCCACATTGCCTTCTTTTGTATAAC--AGG-CACATTATCAATAGCATGAAG 29388 Query 13393 TAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTC 13452 || |||||||||||| || || || |||||||| ||||||| ||| |||| Sbjct 29387 TAGATAATTTTTTTCATTTTCATCAGTTATGTAAGTATCAATCAATAGTGAATAGGTTTC 29328 Query 13453 TGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG 13512 |||||||||||| ||||| |||| | || ||||| ||||||||||| |||| || | Sbjct 29327 TGAATGAATATTCTCCATAGCTAACTAAAATCCATAGAAACATCTAGCTTCTGGAACTTA 29268 Query 13513 AACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572 |||||| | ||||| || || |||||||| || || || || |||||||| ||||| Sbjct 29267 AACTTCTGTACAAAATTATTAAGCCAAGTTTTCATTCACAATACCATCACTAGCTGCAAA 29208 Query 13573 aaaaGCAAGTATGTGCTTAATAAAttttttttC 13605 || ||||||| | ||||||||| | ||||| Sbjct 29207 GAAGGCAAGTACATACTTAATAAAATGCTTTTC 29175 >seq25 Length=399112 Score = 302 bits (334), Expect = 4e-77 Identities = 554/805 (69%), Gaps = 9/805 (1%) Strand=Plus/Minus Query 12804 AAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACATTTTTT 12863 |||| ||| ||| | || |||||| | ||| | || || |||||| ||||| Sbjct 189061 AAAAGTCAGCATCCATAGTAAATACTTTATCTTATTTTTTACTCATAACTCCAGCTTTTT 189002 Query 12864 GATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCA 12923 | || || | ||||||| |||| || || || ||||| |||| ||| || || | |||| Sbjct 189001 GGTAATCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGAGATCATATCCA 188942 Query 12924 TAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAATC 12983 | | || |||||||| || ||| ||| ||| | |||||| | | || |||| Sbjct 188941 TCCATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCAAATATTAATC 188882 Query 12984 TGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTA 13043 | || || ||||| || || || | ||||||||||| | | |||||||| ||||||| | Sbjct 188881 TATCTGCTACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAATTCAA 188822 Query 13044 CAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGAT-AACTATGTCT 13102 | || | |||||| | | ||| | |||||| || ||||| || ||| || || | Sbjct 188821 CTGGTAGAGCTTCACTGATAAATTCTTTTTCAATTTCAACAGCA--GATGAAATAATTTC 188764 Query 13103 CTTATTACGTTCTCTAATGGAGGATTTGA-TAGATGCTTAAACATCATACATGCAAAATC 13161 | | | |||| || | | || | || ||| || | | | ||| || || || Sbjct 188763 ATGAATTCGTTAATTACTTAATTTATTAACTAAATGTTTGTAAAGAAGACAAGCGAAGTC 188704 Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 || | ||||||||||| |||| || |||||||| || || || ||||| | Sbjct 188703 TGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCAGGCATCAA 188644 Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281 || |||||| ||||||||||||||| ||| ||||| ||||| || || |||||||| Sbjct 188643 TGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAAATGCCTTCAAC 188584 Query 13282 TGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCT 13341 | ||||| || || || |||||| || | | | ||| ||| | ||||| || | Sbjct 188583 AGAAGCAAAGGCAATTAATCTTTCAGCAAATGAATCATTATTATTA---ATCCATTTCAT 188527 Query 13342 GGCCCAGTTTGCTTTTTGTTTAACG-CAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400 ||||| ||||||| | || || ||| || ||| ||||| || | | | ||| | Sbjct 188526 TGCCCACATTGCTTTCTTTTAAATTACAGG-CACATTATCTATAGCATGGAGAAGATAGT 188468 Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 ||||||| || || ||||| ||||| ||||| | ||| |||| ||||||| Sbjct 188467 TTTTTTCATTTTCATCAGTTATATAGGTATCAATCAAAAGTGAATATGTTTCAGAATGAA 188408 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520 |||| ||||| || |||| || ||||||||||||||||| || | || || ||||| | Sbjct 188407 TATTCTCCATAGCCATTTAAAATCCATAAAAACATCTAGCTTCAGGAACTTGTACTTCTG 188348 Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580 | ||| || || |||||||| || ||||| || ||||| || ||||| ||||||| Sbjct 188347 TACAGAATTATTAAGCCAAGTTTTCATTTACTATACCATCACTTGCTGCAAAGAAAGCAA 188288 Query 13581 GTATGTGCTTAATAAAttttttttC 13605 | | | ||||||||| | ||||| Sbjct 188287 GGACATACTTAATAAAGTGCTTTTC 188263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430970077405092