Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq1730 89.7 1e-13 >seq1730 Length=1430 Score = 89.7 bits (98), Expect = 1e-13 Identities = 251/382 (66%), Gaps = 10/382 (3%) Strand=Plus/Minus Query 4991 ATTAACATTCTGCCGGTCGCAGAAATGAAGGGTGAGAAAATCGGCGTTGGTGTGACCGGT 5050 || |||||| | ||||| | || ||||||| ||||||||||| | ||| |||| Sbjct 985 ATCAACATTGTCCCGGTTCCGCAACTGAAGGGCCAGAAAATCGGCCTGACCGTGGGCGGT 926 Query 5051 ACTATCGCCAGCACGACTGACACCTCGGGCGACAAAGAGCGACAGACTGCA--GATTTCA 5108 | |||| ||||| || |||||| | ||| | | || || | | ||| || || Sbjct 925 TCCATCGGCAGCAACACCGACACCGCCAGCGGCGATGAACGC--GTCGGCACCGACCCCA 868 Query 5109 CCGCGCTTGA---GTCCAGTAAGTACGAGTGCAATCAGATTAACTTTGACTTCCACCTGA 5165 ||| ||| || || | || ||||| ||||| |||| ||||| ||| | ||| Sbjct 867 CCGGGCTGGATGCGTTCGGT---TACGAATGCAACCAGAACAACTTCGACACCGTTCTGC 811 Query 5166 AATATAAAACCCTCGACCTGTGGGCGCGTTTTCAGGACTTCCAGCGCCGCATCCGTGACG 5225 || | || ||| ||||||||| || | ||||||||| ||||||||||| | Sbjct 810 GCTACGCCAAGCTGGACATGTGGGCGCAGTTCCCCGACTTCCAGACGCGCATCCGTGATG 751 Query 5226 CCATTGTCAAGCGTCAGGCGCTCGATCTCATTATGGCCGGTTTTAACGGTACCACCCGCG 5285 || | | ||||||||||| || |||| | || || || || ||| | | Sbjct 750 CCTGCCTGATCCGTCAGGCGCTGGACACCATTTGCGTGGGCTTCAATGGCACCCACTATG 691 Query 5286 CTGACACCTCGGACCGCACCAAAAATACGCTGCTGCAGGATGTGGCTGTAGGCTGGCTGC 5345 | | ||| | |||||||| ||| ||||||| |||||| | | |||||||| | Sbjct 690 CCAAGACCACCAACCGCACCGCCAATCCGCTGCTTCAGGATTTCAATCGTGGCTGGCTTC 631 Query 5346 AAAAGTACCGCAATGAAGCCCC 5367 | | |||| | |||||||| Sbjct 630 AGGCGATCCGCGACGAAGCCCC 609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97910872249496