Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq7 192 7e-44 seq35 150 2e-31 seq23 147 3e-30 >seq7 Length=634827 Score = 192 bits (212), Expect = 7e-44 Identities = 381/561 (68%), Gaps = 20/561 (4%) Strand=Plus/Plus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 |||||||| || | |||||||| || ||||| |||||| | ||| || ||| || Sbjct 210317 AATTTTGATAAATTAGGAGTAGGAGGTTTAGATAAAGAATTAGCAAATATATTTAGAAGA 210376 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAAT----aaaaaaaTTAGGCTGTAAACA 164513 |||||| | ||||| | |||| || |||||| | | ||||| || ||||| Sbjct 210377 GCATTTTCAACTAGAAGATTTCC-AT---AATAATTTTTAGAGAAATTTGGAATAAAACA 210432 Query 164514 TATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATG 164573 ||| |||||| | |||||| |||| || ||||| || ||||| || || || ||| Sbjct 210433 TATTAAAGGATTATTATTATATGGTCCACCTGGAACAGGAAAAACTTTGATTGCAAGATA 210492 Query 164574 CATTGCTCAAGCTTTTAAATCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAA 164633 | || ||| || | | | |||| || ||||||||||| || ||| |||| | Sbjct 210493 GTTAGCAAAAGTATTGAGAGCTAGACCTCCAAAGATTGTTAATGGACCAGAAATATTTAG 210552 Query 164634 CAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGA 164693 |||| |||||| ||| | || | ||| ||||||| || ||| | || || | | || Sbjct 210553 TAAATTTGTAGGAGAGGCTGAGGAGAATATTAGAAAATTATTTGAAGATGCAATAAAGGA 210612 Query 164694 ACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGC 164753 || | | |||| | ||| |||||||| | ||||| |||||||| || ||||| Sbjct 210613 TTAAGAAACTTTAGGTGATGAAAGTGAATTACATATAATTGTATTTGATGAAATGGATGC 210672 Query 164754 TCTTTGCAAAAAACGTGG-------TGATAATAT-TA----TTCATGATGCAGTGGTTAA 164801 | |||| ||| | | || | || | | || ||||| || ||||| Sbjct 210673 TATTTGTAAATAGAGAGGATCTGTTTCATCAGGTGTAGGAGCATATGATAATGTTGTTAA 210732 Query 164802 TCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTAT 164861 | | || | || | |||||||||||| | || |||||||||||| | | | ||||| Sbjct 210733 TTAATTATTATCAATGATAGATGGTGTAAATTCTTTAAATAATATTCTTGTGATTGGTAT 210792 Query 164862 GACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATTGAA 164921 ||| || || |||||||||||||| ||| | ||| ||||||| |||| ||| || | Sbjct 210793 GACAAATAGAAAAGATTTAATTGATGAAGCTGTTTTAAGACCTGGAAGATTTGAAGTGCA 210852 Query 164922 AATAGAAATAGGATTACCCGA 164942 ||||| |||||||||| || Sbjct 210853 TATAGAGGTAGGATTACCAGA 210873 >seq35 Length=366584 Score = 150 bits (166), Expect = 2e-31 Identities = 458/706 (65%), Gaps = 34/706 (5%) Strand=Plus/Minus Query 164400 TTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGAGC 164459 |||||| || ||||||| || || ||||| |||||| | || || ||| |||| Sbjct 197593 TTTTGATAAATTGGGAGTTGGAGGTTTAGATAAAGAATTAGCAAACATATTTAGAAGAGC 197534 Query 164460 ATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATAAA 164519 ||| | || ||| | ||||| | | | | | |||| || ||| ||| | || Sbjct 197533 CTTTTCATCAAGAAGATTTCCTTAAGCATTTCTTGAGAAATATGGAATTAAGCATGTTAA 197474 Query 164520 AGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATTGC 164579 |||| | ||| | ||| || || || || ||||| || || || |||| | || Sbjct 197473 AGGATTATTACTTTTTGGTCCACCAGGAACTGGCAAAACTTTGATTGCACGATAATTGGC 197414 Query 164580 TCAAGCTTTTAAATCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATA 164639 | ||| || ||| | |||| ||||||||| ||||| || || | || | |||| Sbjct 197413 TAAAGTATTGAAAGCTAGACCTCCTAAAATTGTAAATGGACCAGAGATTTTTAGTAAATT 197354 Query 164640 TGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGC---TGAAGAAGAACA 164696 ||| || || | |||| ||||||||||| | ||| || || || || || | Sbjct 197353 TGTTGGAGAAGCTGAAGAAAATGTTAGAAAACTATTTGCTGATGCTATTGCTGATTAAGA 197294 Query 164697 AAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCT 164756 | |||| || || | ||| | |||||| | |||||||||||||| || ||||| | Sbjct 197293 GACAAAAGGAGATTAA---AGTGATTTACATATCATTGTTTTTGATGAAATGGATGCAAT 197237 Query 164757 TTGCAAAAAACGTGG-TGA--TAAT-----ATTA----TTCATGATGCAGTGGTTAATCA 164804 || ||| | | || | | |||| || | | ||||| || || ||| | Sbjct 197236 CTGTAAATAGAGAGGATCAATTAATTCTGGATCAGGAGCTTATGATAATGTTGTCAATTA 197177 Query 164805 GTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGAC 164864 || || |||| || ||||| || | || | |||||||| ||| || | |||||||| Sbjct 197176 ATTACTGTCTATGATTGATGGAGTCAATTCTCTTAATAATATATTAGTTATTGGTATGAC 197117 Query 164865 CAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATTGAAAAT 164924 || || || ||||||||||| ||| |||| |||| || |||| ||| | | || Sbjct 197116 TAATAGAAAAGACTTAATTGATGAGGCTGTATTGAGACCAGGAAGATTTGAAGTTCATAT 197057 Query 164925 AGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAA 164984 ||| |||||||||| || || |||| | | ||||| || ||||| Sbjct 197056 TGAAGTAGGATTACCTGATGAACAAGGTAGATAATAGATTTTGAATATTCAT-------- 197005 Query 164985 AATGAAATCCTGTGATATATTATCTCCC--------GATGTAGATTTAAATAAAATAGCT 165036 | ||||| || || | | || ||| |||||| ||||| | || ||||| Sbjct 197004 ACTGAAAATCTTAGAAAGAATAATGCCCTTGATAAAGATGTAAATTTAGAAGAATTAGCT 196945 Query 165037 GCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAA 165082 | ||||||||||||| |||||||||| | || | | |||||| Sbjct 196944 TCAATCACTAAAAATTATACTGGTGCTGAAATTGAAGCAGTAGTAA 196899 >seq23 Length=406218 Score = 147 bits (162), Expect = 3e-30 Identities = 451/688 (66%), Gaps = 22/688 (3%) Strand=Plus/Minus Query 164401 TTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGAGCA 164460 ||||| || ||||||| || || ||||| |||||| | ||| || ||| ||||| Sbjct 231935 TTTGATAAATTGGGAGTTGGAGGTTTAGATAAAGAATTAGCAAATATATTTAGAAGAGCA 231876 Query 164461 TTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATAAAA 164520 ||| | |||||| | |||| | | | |||||| || |||||| | ||| Sbjct 231875 TTTTCATCTAGAAGATTTCCATAAGCTTTCCTTGAAAAATATGGAATCAAACATGTTAAA 231816 Query 164521 GGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATTGCT 164580 || | ||| | |||| || || || |||||||| || || || ||| | ||| Sbjct 231815 GGTCTCTTACTTTATGGTCCACCAGGAACTGGTAAAACTTTGATTGCAAGATAATTGGCT 231756 Query 164581 CAAGCTTTTAAATCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATAT 164640 ||| || || | |||| ||||||||| ||||| || ||| | || | |||| | Sbjct 231755 AAAGTATTGAAGGCTAGACCTCCTAAAATTGTAAATGGACCAGAAATTTTCAGTAAATTT 231696 Query 164641 GTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAG 164700 || || || | |||| ||||||||||| | ||| || ||| | ||| || || Sbjct 231695 GTTGGAGAAGCTGAAGAAAATGTTAGAAAACTATTTGCTGATGCTATTGCAGATTAAGAG 231636 Query 164701 AAAGCAGGT--TTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTT 164758 | | |||| ||| ||| | |||||| | |||||||||||||| || |||||| | | Sbjct 231635 ACAAAAGGTGATTA--AAGTGATTTACATATCATTGTTTTTGATGAAATGGATGCTATCT 231578 Query 164759 GCAAA-AAACGTGGTGA--TAA-----TATTA----TTCATGATGCAGTGGTTAATCAGT 164806 | ||| | | ||| | ||| || | | ||||| || || ||||| | Sbjct 231577 GTAAATAGAGAGGGTCAATTAACTCTGGATCAGGAGCTTATGATAATGTTGTAAATCAAT 231518 Query 164807 TGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCA 164866 | || |||| || ||||| || | || | |||| || ||| || | |||||||| | Sbjct 231517 TACTATCTATGATTGATGGAGTCAATTCTCTTGATAACATATTAGTTATTGGTATGACTA 231458 Query 164867 ACCGACCTGATTTAATTGATGATGCT-TTATTACGACCTGGTCGATTAGAATTGAAAATA 164925 | || |||||||||||||| ||| || ||| |||| || |||| ||| | | || Sbjct 231457 ATAGAAAAGATTTAATTGATGAAGCTGTTCTTA-GACCAGGAAGATTTGAAGTTCATATT 231399 Query 164926 GAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAA 164985 || | |||||||| || || |||| | ||||||| || |||| | ||| Sbjct 231398 GAGGTTGGATTACCTGATGAATAAGGTAGATAATAAATTTTGAACATTCACACTG--AAA 231341 Query 164986 ATGAAATCCTG--TGATATATTATCTCCCGATGTAGATTTAAATAAAATAGCTGCCGAAA 165043 || || | |||| | | | |||||| ||||| | || ||||| | || Sbjct 231340 ATCTAAGAAAGAATGATGCACTTGATAAAGATGTAAATTTAGAAGAATTAGCTTCAATAA 231281 Query 165044 CTAAAAATTATAGTGGTGCTGAATTAGA 165071 |||||||||||| ||| |||||| |||| Sbjct 231280 CTAAAAATTATACTGGAGCTGAAATAGA 231253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595854526053600