Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq114 136 4e-27 seq454 134 1e-26 seq507 129 5e-25 seq337 129 5e-25 seq287 129 5e-25 seq13 107 2e-18 >seq114 Length=165420 Score = 136 bits (150), Expect = 4e-27 Identities = 177/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 94767 TAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCA 94826 ||| | |||||| ||| ||||| |||| ||| || || || | ||| |||||||||| | Sbjct 163548 TAATAATTTACATTCCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAA 163607 Query 94827 CGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCT 94884 ||||||||| | | |||||| ||| || | | ||||| |||| || | ||| Sbjct 163608 TGTTATAATC--TGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCT 163665 Query 94885 TTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944 || | ||| || || || ||||| ||||| |||||||| |||||||| ||| | | ||| Sbjct 163666 TTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGT 163725 Query 94945 GTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 ||| | | || || |||| ||||||||||| || || | ||||| ||||| || || Sbjct 163726 GTCTGATGGTTCAACATCAAGAGTGATGGTTTTACCGGTTAATGTTTTAACAAAAATTTG 163785 Query 95005 CAT 95007 ||| Sbjct 163786 CAT 163788 Score = 134 bits (148), Expect = 1e-26 Identities = 173/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||||| ||| ||||| |||| ||| || || || | ||| |||||||||| | |||| Sbjct 153372 TTTACATTCCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATATTAT 153313 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||| | | |||||| ||| || | | ||||| |||| || | ||||| | Sbjct 153312 AATC--TGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTA 153255 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||| || ||||| ||||||||||| |||||||| |||||||| || | | |||||| | Sbjct 153254 ATCAGGTGGAATTCCTTCTTTGTCTTAAATTTTAGCCTTGACAGCATCTATAGTGTCTGA 153195 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| ||||||||||| ||||| | ||||| ||||| || | ||| Sbjct 153194 TGGTTCTACATCAAGAGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTACAT 153138 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| ||||| |||| ||| || || || | ||| |||||||||| | ||||||||| | Sbjct 144112 TCCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATGTTATAATC--T 144055 Query 94840 CATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | |||||| ||| || | | ||||| |||| || | ||||| | ||| | Sbjct 144054 GAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAAGT 143995 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || || ||||| ||||| ||||||||||||| ||| || | | |||||| | | || Sbjct 143994 GGGATTCCTTCCTTGTCTTAAATTTTTGCCTCGACAGCTTCAATAGTGTCTGATGGTTCA 143935 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| ||||||||||| ||||| | ||||| ||||| || | ||| Sbjct 143934 ACATCAAGAGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTTCAT 143885 Score = 113 bits (124), Expect = 4e-20 Identities = 150/205 (73%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| ||| || ||||| | ||| |||||||||| | ||||||||| | Sbjct 164056 CCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAATC--TG 164113 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | |||||| ||| || | | ||||| |||| || | ||||| | ||| || | Sbjct 164114 AAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 164173 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| |||||||| |||||||| ||| | | |||||| | | || Sbjct 164174 GGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAG 164233 Query 94959 CGTCAATCGTGATGGTTTTTCCAGT 94983 | |||| ||||||| ||||||||| Sbjct 164234 CATCAAGAGTGATGG-TTTTCCAGT 164257 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/245 (69%), Gaps = 9/245 (4%) Strand=Plus/Minus Query 94767 TAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCA 94826 ||| | |||||| ||| ||||| |||| ||| || || || | ||| |||||||||| | Sbjct 149745 TAATAATTTACATTCCACCTCTTAATCTCAA-ACTAAATGGAGAGTTGATTCCTTTTAAA 149687 Query 94827 CGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT---TTTCC-GCCAAAGATTAAT 94882 ||||||||| | | ||||| ||||| | |||| || | | Sbjct 149686 TGTTATAATC--TGAAAGTGTNNNNNNNNNNNNNNNNNNNNTTTCCTGACAAA-ATGAGT 149630 Query 94883 CTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACA 94942 |||| | ||| | ||| | ||||| ||||| |||||||| |||||||| ||| | | | Sbjct 149629 CTTTATTAATCAGTGGGATT-CCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATA 149571 Query 94943 GTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002 ||||| | | || || |||| ||||||||||| ||||| | || || || || || Sbjct 149570 GTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTACCAGTCAAGGTCTTAACGAAAATT 149511 Query 95003 TGCAT 95007 ||||| Sbjct 149510 TGCAT 149506 >seq454 Length=44262 Score = 134 bits (148), Expect = 1e-26 Identities = 173/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||||| |||||||||||||| ||| || ||||| | || |||||||||| | ||||| Sbjct 41258 TTTACATTCCTCCTCTCAATCTCAAAACTAAGTGAAGTGTTGATTCCTTTTAGATGTTAT 41317 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 ||| || | |||||| | ||| || | | |||||| | ||||| | ||||| | Sbjct 41318 AAT--CTGAAAGTGTTCTACCATCTTCTAATTATTTTCCAGCGAAGATAAGTCTTTATTA 41375 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||| || || || ||||| ||||| || ||||| || ||||| || | | ||||||| Sbjct 41376 ATCGGGTGGGATTCCTTCCTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCAGA 41435 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| || || |||||||| || || || || |||||||| | ||| Sbjct 41436 TGGTTCAACATCAAGAGTAATAGTTTTTCCTGTGAGTGTCTTGACAAAGATTTACAT 41492 >seq507 Length=36014 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| ||| || ||||| | ||| |||||||||| | ||||||||| | Sbjct 35714 CCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAATC--TG 35657 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | |||||| ||| || | | ||||| |||| || | ||||| | ||| || | Sbjct 35656 AAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 35597 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| |||||||| |||||||| ||| | | |||||| | | || | Sbjct 35596 GGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAA 35537 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| ||||||||||||||||| | || || || || || | ||| Sbjct 35536 CATCAAGAGTGATGGTTTTTCCAGTCAAGGTCTTAACGAAAATTTACAT 35488 >seq337 Length=64228 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| |||||| ||||| | ||| |||||||||| | |||||| || | Sbjct 63539 CCACCTCTTAATCTCAACACTAAGTGAAGAGTTGATTCCTTTTAAATGTTATAGTC--TG 63482 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | |||||| ||| || | | ||||| |||| || | ||||| | ||| || | Sbjct 63481 AAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 63422 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| |||||||| |||||||| ||| | | |||||| | | || | Sbjct 63421 GGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAA 63362 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| ||||||||||||||||| | ||| || || || || | ||| Sbjct 63361 CATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAACGAAAATTTACAT 63313 Score = 122 bits (134), Expect = 8e-23 Identities = 167/230 (73%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| |||||| ||||| | ||| |||||||||| | |||||| || | Sbjct 61768 CCACCTCTTAATCTCAACACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAGTC--TG 61711 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | |||||| ||| || | | ||||| |||| || | ||||| | ||| || | Sbjct 61710 AAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 61651 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| |||||||| |||||||| ||| | | |||||| | | || | Sbjct 61650 GGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAA 61591 Query 94959 CGTCAATCGTGATGGTTTTTCCA-GTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| ||||||||||||||| || | ||| || || || || | ||| Sbjct 61590 CATCAAGAGTGATGGTTTTTCCAGGTCAAAGTCTTAACGAAAATTTACAT 61541 >seq287 Length=75303 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| |||||| ||||| | ||| |||||||||| | |||||| || | Sbjct 983 CCACCTCTTAATCTCAACACTAAGTGAAGAGTTGATTCCTTTTAAATGTTATAGTC--TG 926 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | |||||| ||| || | | ||||| |||| || | ||||| | ||| || | Sbjct 925 AAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 866 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| |||||||| |||||||| ||| | | |||||| | | || | Sbjct 865 GGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAA 806 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| ||||||||||||||||| | ||| || || || || | ||| Sbjct 805 CATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAACGAAAATTTACAT 757 Score = 125 bits (138), Expect = 6e-24 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| |||||| ||||| | ||| |||||||||| | |||||| || | Sbjct 1988 CCACCTCTTAATCTCAACACTAAGTGAAGAGTTGATTCCTTTTAAATGTTATAGTC--TG 1931 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | |||||| ||| || | | ||||| |||| || | ||||| | ||| || | Sbjct 1930 AAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 1871 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| |||||||| |||||||| ||| | | |||||| | | || | Sbjct 1870 GGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAA 1811 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 | |||| ||||||||||||||||| | ||| || || || Sbjct 1810 CATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAACGAA 1771 Score = 120 bits (132), Expect = 3e-22 Identities = 166/229 (72%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| |||||| ||||| | ||| |||||||||| | |||||| || | Sbjct 2993 CCACCTCTTAATCTCAACACTAAGTGAAGAGTTGATTCCTTTTAAATGTTATAGTC--TG 2936 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | |||||| ||| || | | ||||| |||| || | ||||| | ||| || | Sbjct 2935 AAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 2876 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| |||||||| |||||||| ||| | | |||||| | | || | Sbjct 2875 GGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAA 2816 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| ||||||| ||||||||| | ||| || || || || | ||| Sbjct 2815 CATCAAGAGTGATGG-TTTTCCAGTCAAAGTCTTAACGAAAATTTACAT 2768 >seq13 Length=521119 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | || ||| || || || | || ||||| |||| | ||||||||| Sbjct 46020 CCTCCTCTGAGTCTCAATACTAAATGAAGTGTTGATTCTTTTTAAATGTTATAATCAGAA 46079 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||| | | ||||| |||| |||||||||| | ||| ||||| Sbjct 46080 AGAGTTCTTCCATCCTCTAATTACTTTCCAGCAAAAATTAATCTTTATTAATCAGGAGGG 46139 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| || || |||||||| || || ||| || || | | || || Sbjct 46140 ATTCCTTCTTTGTCTTAGATCTTTGCCTTAACAGCATCGATGGTATCCGATGGCTCAACA 46199 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || || || || || ||||| || | ||| Sbjct 46200 TCAAGTGTGATGGTCTTGCCTGTGAGGGTCTTAACAAAAATTTACAT 46246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448278053860560