Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq25 342 5e-89 seq253 336 2e-87 >seq25 Length=399112 Score = 342 bits (378), Expect = 5e-89 Identities = 659/973 (68%), Gaps = 45/973 (5%) Strand=Plus/Minus Query 21129 AAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTTT 21188 |||| |||||||| | | || || ||||||| |||||| ||||| ||| ||||| Sbjct 189061 AAAAGTCAGCATCCATAGTAAATACTTTATCTTATTTTTTACTCATAACTCCAGCTTTTT 189002 Query 21189 GATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCA 21248 | ||||| | ||||||| ||||||| ||||| || || |||| || || || |||| Sbjct 189001 GGTAATCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGAGATCATATCCA 188942 Query 21249 TAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATC 21308 | | ||||| ||||| | || ||| | |||||| | || | | | ||| ||||| Sbjct 188941 TCCATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCAAATATTAATC 188882 Query 21309 TATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTA 21368 |||||||||||||||| ||||||| |||||| | | ||||||| || || |||| | Sbjct 188881 TATCTGCTACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAATTCAA 188822 Query 21369 CAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGC---TTCAACAATTATAT 21425 | || ||||||| | | ||| |||||| || || || | || |||| || Sbjct 188821 CTGGTAGAGCTTCACTGATAAATTCTTTTTCAATTTCAACAGCAGATGAAATAATTTCAT 188762 Query 21426 TTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAAT 21485 || || | || |||| || | ||| ||||| | | | ||| || || | Sbjct 188761 GAAT--TCGTTAAT-TACTTAATTTATTAACTAAATGTTTGTAAAGAAGACAAGCGAAGT 188705 Query 21486 CACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTA 21545 | ||| | ||||||||| || ||||||||||| ||||| || | || ||||| | Sbjct 188704 CTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCAGGCATCA 188645 Query 21546 ATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAA 21605 || ||| ||||| | ||||||||| | ||||| || |||||||||||||| |||| Sbjct 188644 ATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAAATGCCTTCAA 188585 Query 21606 CGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTT 21665 | | |||||| |||| ||||| |||| | || || || |||| |||||||| Sbjct 188584 CAGAAGCAAAGGCAATTAATCTTTCAGCAAAT---GAATCATTATTATTAATCCATTTCA 188528 Query 21666 CTGCCCATTTTGCCTTTTCTTTAA-TACAATCAATTGTATCAATAGCTTTTAAAAGATGA 21724 |||||| |||| || | || || |||| || | |||| ||||| | | ||||| Sbjct 188527 TTGCCCACATTGCTTTCTTTTAAATTACAGGCACAT-TATCTATAGCATGGAGAAGATAG 188469 Query 21725 tttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGT 21784 |||||||||| | |||| ||||| ||| |||||||||| Sbjct 188468 TTTTTTTCATTTTCATCAGTTATATAGGTATCAATCAAAAGTGAATATGTTTCAGAATGA 188409 Query 21785 ATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCG 21844 ||||| || || || || | |||||| ||||||||||| || || | | ||| || || Sbjct 188408 ATATTCTCCATAGCCATTTAAAATCCATAAAAACATCTAGCTTCAGGAACTTGTACTTCT 188349 Query 21845 GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCC 21904 | | | ||| || ||||||||||||||||||||| |||||||| || ||||| || || Sbjct 188348 GTACAGAATTATTAAGCCAAGTTTTCATTTACTATACCATCACTTGCTGCAAAGAAAGCA 188289 Query 21905 AATATATTTTTTATAAAATATCGTTCGTTATCT---GTTAATTTTTTCCAATC--TAA-- 21957 | | || || ||||| | | | | |||| || | ||||| |||||| ||| Sbjct 188288 AGGACATACTTAATAAAGT---GCTTTTCATCTGAGGTGAGTTTTTCCCAATCTTTAAGA 188232 Query 21958 ---TAAA-------TCTTTTGAT--------------AAATCTACTTCTTCAGTTGTCCA 21993 |||| | ||| || ||||||| |||||||| |||||| Sbjct 188231 TCCTAAAATTTTATTACTTTAATATAATACCTAATACAAATCTATTTCTTCAGCTGTCCA 188172 Query 21994 AAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATAT 22053 || || || || | ||||||||| |||| |||||||||||| | |||||||| | Sbjct 188171 GAAACTTGCTTTATGTTACTTATACATATTCCAAATATCATTATATTTGATTGGAAAGAG 188112 Query 22054 TACAAACCTGTTA 22066 |||||| || ||| Sbjct 188111 TACAAATCTATTA 188099 >seq253 Length=82967 Score = 336 bits (372), Expect = 2e-87 Identities = 660/977 (68%), Gaps = 42/977 (4%) Strand=Plus/Minus Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182 ||| | |||| |||||||| | | || || ||||| | |||||| ||| | ||| Sbjct 29979 TTAATCAAAAGTCAGCATCCATAGTAAATACTTTATCCTATTTTTTACTCATGACTCCAG 29920 Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 ||||| |||||| | ||||||| ||||||||||||| || || |||| || ||||| Sbjct 29919 CTTTTTAATAATCTCCAACTCTTCTTTCGAAAAAATTAGTTTTACCTTGTAAAGATATCA 29860 Query 21243 ATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATA 21302 ||||| | ||||| ||||| | || ||| | |||||| | || | | | ||| Sbjct 29859 TATCCATCCATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCAAATA 29800 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 |||||||||||| |||||||| ||||||| ||| | | | |||||||||| || | Sbjct 29799 TTAATCTATCTGCAACAAATTCAATATATTATTTCATCATATTAGAATTCATACCAATTA 29740 Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422 ||| ||| | | ||||| | | ||| |||||| || || || ||||| Sbjct 29739 ATTCTACTGATAAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGCAGATGAAATTA 29680 Query 21423 TATTTATTA-TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCA 21481 | || || | | || | |||| || | ||| ||||| | | | ||| || Sbjct 29679 T-TTCATGAATTCTTTAATTACTTAATTTATTGATTAAATGTTTGTAAAGTAGACAAGCG 29621 Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 || || ||| | ||||||||| || ||||||||||| |||||||| | || ||| Sbjct 29620 AAGTCTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTGAGTCCAGGC 29561 Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCC 21601 || ||| ||| ||||||| ||| || || | ||||| || |||||||| || || Sbjct 29560 ATCAATGATCTTTTTTTTATCCAGAAAATGGCACAAAATGAACCAGAAAAGAATATACCT 29501 Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCAT 21661 ||||| | |||||| |||| ||||| |||| | || || || ||||| |||||| Sbjct 29500 TCAACAGAAGCAAAAGCAATTAATCTTTCAGCAAAT---GAATCATTATCATTAATCCAT 29444 Query 21662 TTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAG 21720 || ||||| ||||||| || | || ||| || | |||||||||| | | || Sbjct 29443 TTCATAGCCCACATTGCCTTCTTTTGTATAACAGGCACAT-TATCAATAGCATGAAGTAG 29385 Query 21721 ATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGA 21780 || ||||||||||| | |||| |||||| ||| |||| || Sbjct 29384 ATAATTTTTTTCATTTTCATCAGTTATGTAAGTATCAATCAATAGTGAATAGGTTTCTGA 29325 Query 21781 ATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAAC 21840 ||| ||||| || || |||| || |||||| || |||||||| || |||| | || ||| Sbjct 29324 ATGAATATTCTCCATAGCTAACTAAAATCCATAGAAACATCTAGCTTCTGGAACTTAAAC 29265 Query 21841 CTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAA 21900 || | | ||||| || ||||||||||||||| || || |||||||| || ||||| || Sbjct 29264 TTCTGTACAAAATTATTAAGCCAAGTTTTCATTCACAATACCATCACTAGCTGCAAAGAA 29205 Query 21901 TGCCAATATATTTTTTATAAAATATCGTTCGTTATCT---GTTAATTTTTTCCAATC--T 21955 || | || || || ||||||| | | | |||| || | ||||| |||||| | Sbjct 29204 GGCAAGTACATACTTAATAAAAT---GCTTTTCATCTGAGGTAAGTTTTTCCCAATCTTT 29148 Query 21956 AA-----TAAA--------TCTTTT--------------GATAAATCTACTTCTTCAGTT 21988 || |||| ||||| ||||||||| |||||||| | Sbjct 29147 AAGATCCTAAAATTTTATTACTTTTATTATCTTACTTAATATAAATCTATTTCTTCAGCT 29088 Query 21989 GTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGA 22048 ||||| || || || || | |||||||||| |||| |||||||| ||| | |||||| Sbjct 29087 GTCCAGAAACTTGCTTTATGTTATTTATACATATTCCAAATATCATTGTATTTAATTGGA 29028 Query 22049 AATATTACAAACCTGTT 22065 || | |||||| || || Sbjct 29027 AAGAGTACAAATCTATT 29011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531885202009040