Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq25 260 4e-64 seq253 239 1e-57 seq478 95.1 3e-14 >seq25 Length=399112 Score = 260 bits (288), Expect = 4e-64 Identities = 539/793 (68%), Gaps = 23/793 (3%) Strand=Plus/Plus Query 22168 GATTGGCCAAAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCATTCTTT 22227 |||||| |||||| || | | ||| | || ||||| || ||| | || || |||||| Sbjct 188239 GATTGGGAAAAACTCACCTCAGATGAAAAGCACTTTATTAAGTATGTCCTTGCTTTCTTT 188298 Query 22228 GCTACCGCAGACGGTATAGTTTTTGAGAATCTAG-TGACTAATTTTGCATCTGAAATTCA 22286 || | || |||||||| ||| || | | | | ||||| || | | ||| | || Sbjct 188299 GCAGCAAGTGATGGTATAGTAAATGAAAACTTGGCTTAATAATTCTGTA-CAGAAGTACA 188357 Query 22287 ATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGA 22346 | || || || |||||||| ||||| | ||||| || || ||| |||| | || Sbjct 188358 AGTTCCTGAAGCTAGATGTTTTTATGGATTTTAAATGGCTATGGAGAATATTCATTCTGA 188417 Query 22347 AACATATTC---TATGAT-GCTACAGTCACTCGTAGAA--GATAAAGACGAACAACGAAA 22400 ||||||||| | |||| | ||| || || || ||| || | ||| || || Sbjct 188418 AACATATTCACTTTTGATTGATAC-----CTA-TATAACTGATGAAAATGAAAAA---AA 188468 Query 22401 CT---TATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCT 22457 || | ||| || || | | | |||| | || || ||| ||||| | Sbjct 188469 CTATCTTCTCCATGCTATAGATAATGTGCCTGTAATTTAAAAGAAAGCAATGTGGGCAAT 188528 Query 22458 GAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGA 22517 ||||||||| || ||| | |||||| || ||| | | ||||| |||||| ||||| Sbjct 188529 GAAATGGATTAATAATAATGATTCATTTGCTGAAAGATTAATTGCCTTTGCTTCTGTTGA 188588 Query 22518 AGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTAT 22577 |||||||||||||||||| |||||||||| || |||||| | |||||| | || | || Sbjct 188589 AGGCATTTTCTTTTCTGGTTCATTTTGTGCTATATTTTGGATCAAAAAAAGATCATTGAT 188648 Query 22578 GCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTT 22637 ||| || || || ||||||||||| |||||| ||||||| ||||||||||| || || Sbjct 188649 GCCTGGACTCACCTTTTCAAATGAATTAATTTCAAGAGATGAAGGTCTTCATACAGACTT 188708 Query 22638 TGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTACTTGA 22697 || ||| | || || || ||| | || ||||| | || || | | ||| Sbjct 188709 CGCTTGTCTTCTTTA---CAAACATTTAGTTAATAAATTAAGTAATTAACGAATTCATGA 188765 Query 22698 TATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAG 22757 |||||| || ||| |||||| ||||| |||||| | || || ||||||| Sbjct 188766 AATTATTTCATCTGCTGTTGAAATTGAAAAAGAATTTATCAGTGAAGCTCTACCAGTTGA 188825 Query 22758 TCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCT 22817 | ||||| || ||| | | | ||||| ||||||| ||||||| |||||| | | Sbjct 188826 ATTAATTGGAATGAATTCTAATTTAATGAAATAATATATTGAATTTGTAGCAGATAGATT 188885 Query 22818 ATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGA 22877 | || || || | || | | || |||||| ||||| |||||||||||||| Sbjct 188886 AATATTTGCATTAGGAGCTCCTAAAATTTATAATTCAAAGAATCCTTTTGAATGGATGGA 188945 Query 22878 ACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAA 22937 | || || | |||| || || ||||||||||||| ||||||||| || |||||||| Sbjct 188946 TATGATCTCCTTATAAGGTAAAACTAATTTCTTCGAAAGAAGAGTTGGAGATTACCAAAA 189005 Query 22938 AGCAGGTGTTATG 22950 ||| || |||||| Sbjct 189006 AGCTGGAGTTATG 189018 >seq253 Length=82967 Score = 239 bits (264), Expect = 1e-57 Identities = 530/788 (67%), Gaps = 13/788 (2%) Strand=Plus/Plus Query 22168 GATTGGCCAAAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCATTCTTT 22227 |||||| ||||||||| | | ||| | |||||||| || ||| | || || |||||| Sbjct 29151 GATTGGGAAAAACTTACCTCAGATGAAAAGCATTTTATTAAGTATGTACTTGCCTTCTTT 29210 Query 22228 GCTACCGCAGACGGTATAGTTTTTGAGAATCTAG-TGACTAATTTTGCATCTGAAATTCA 22286 || | || ||||| || ||| || | | | | |||||||| | | ||| || | Sbjct 29211 GCAGCTAGTGATGGTATTGTGAATGAAAACTTGGCTTAATAATTTTGTA-CAGAAGTTTA 29269 Query 22287 ATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGA 22346 | ||||| || |||||||||||||| | | | || || ||| |||| | || Sbjct 29270 AGTTCCAGAAGCTAGATGTTTCTATGGATTTTAGTTAGCTATGGAGAATATTCATTCAGA 29329 Query 22347 AACATATTC--TAT-GAT-GCTACAGTCACTCGTAGAAGATAAAGACGAACAACGAAACT 22402 ||| ||||| ||| ||| | ||| || || ||| || | ||| || | Sbjct 29330 AACCTATTCACTATTGATTGATACTTACA----TAACTGATGAAAATGAAAAAAATTATC 29385 Query 22403 TATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAAT 22462 || | | || ||| | | | || | || |||||| ||||| |||||| Sbjct 29386 TACTTCATGCTATTGATAATGTGCCTGTTATACAAAAGAAGGCAATGTGGGCTATGAAAT 29445 Query 22463 GGATGAACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCA 22522 |||| || || | |||||| || ||| | | ||||| |||||| |||||||| | Sbjct 29446 GGATTAATGATAATGATTCATTTGCTGAAAGATTAATTGCTTTTGCTTCTGTTGAAGGTA 29505 Query 22523 TTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGG 22582 | ||||||||||| |||||||||| || || ||| |||||||| | || | ||||| | Sbjct 29506 TATTCTTTTCTGGTTCATTTTGTGCCATTTTCTGGATAAAAAAAAGATCATTGATGCCTG 29565 Query 22583 GTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGT 22642 | || || ||||||||||| |||||| ||||||| ||||||||||| || || || | Sbjct 29566 GACTCACATTTTCAAATGAATTAATTTCAAGAGATGAAGGTCTTCATACAGACTTCGCTT 29625 Query 22643 GTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTA 22702 || | || || || ||| | || ||||| | || ||| | | ||| || | Sbjct 29626 GTCTACTTTA---CAAACATTTAATCAATAAATTAAGTAATTAAAGAATTCATGAAATAA 29682 Query 22703 TTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCA 22762 || || ||| |||||| ||||| ||||||| | || || ||| ||||| | | Sbjct 29683 TTTCATCTGCTGTTGAAATTGAAAAAGAATTTATTAGTGAAGCTTTATCAGTAGAATTAA 29742 Query 22763 TTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAA 22822 ||||||| ||| | | |||| ||||||| |||||||||||||| | || || Sbjct 29743 TTGGTATGAATTCTAATATGATGAAATAATATATTGAATTTGTTGCAGATAGATTAATAT 29802 Query 22823 TTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTA 22882 || || | || | | || |||||| ||||| |||||||||||||| | | Sbjct 29803 TTGCATTAGGAGCTCCTAAAATTTATAATTCAAAGAATCCTTTTGAATGGATGGATATGA 29862 Query 22883 TTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAG 22942 | || | |||| || || ||||| ||||||| ||||||||| || || ||||||| | Sbjct 29863 TATCTTTACAAGGTAAAACTAATTTTTTCGAAAGAAGAGTTGGAGATTATTAAAAAGCTG 29922 Query 22943 GTGTTATG 22950 | || ||| Sbjct 29923 GAGTCATG 29930 >seq478 Length=39852 Score = 95.1 bits (104), Expect = 3e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 12832 AATGTCAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCCTGTTTTTACA-TA 12890 ||||||| || |||||| |||||||||||||| ||||| |||||||| | |||| | Sbjct 33471 AATGTCAAAGCATCCATATCTTCAGTTGCTGTAGCATATATTTTTCCTG-CTCTACACAA 33529 Query 12891 TGCAGCACATGTAGCTTCGGCCTCACATGGTGCTTGAACGACCGGAATGCCCATTAGGGT 12950 | |||||||| |||||| || |||||||||||| || || ||| ||||| | | Sbjct 33530 TTCAGCACATTAAGCTTCTGCTTCACATGGTGCTATAATAACTGGACAACCCATCAATTT 33589 Query 12951 TAGCATCTTTTTTACTTCTTC 12971 ||||| ||| || | ||||| Sbjct 33590 AAGCATTTTTATTGCATCTTC 33610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303314423634572