Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq337 100 2e-16 seq507 98.7 7e-16 seq114 98.7 7e-16 seq287 91.5 1e-13 seq1719 84.2 1e-11 seq1384 84.2 1e-11 seq56 82.4 5e-11 >seq337 Length=64228 Score = 100 bits (110), Expect = 2e-16 Identities = 176/255 (69%), Gaps = 1/255 (0%) Strand=Plus/Minus Query 38067 GAACAAATACAAATCCAATCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCT 38125 ||| | ||||| | |||||||| |||||||| || | |||||| || |||||||| Sbjct 62565 GAATATATACAGAGAAAATCATTAGCCACCTCTTAATCTCAACACTAAGTGAAGAGTTGA 62506 Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||||||| ||| || || || || | | | | || ||||||| ||||| ||||| Sbjct 62505 TTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 62446 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || | || || ||| | |||| ||||| ||||| |||||| ||| ||| Sbjct 62445 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGC 62386 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | | ||| ||| |||||| || | ||||||||||| || || | ||||| || Sbjct 62385 GTCAATAGTGTCTGATGGTTCAACATCAAGAGTAATAGTTTTTCCTGTTAGTGTTTTAAC 62326 Query 38306 GAATATCTGCATGTT 38320 ||||| | ||| || Sbjct 62325 AAATATTTACATTTT 62311 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | |||||| || || ||||| ||||||| ||| || || | Sbjct 61543 CATT-CCACCTCTCAATCTCAACACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAGT 61485 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 61484 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 61425 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| |||||| ||| ||| | | ||| ||| || Sbjct 61424 GTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 61365 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || | ||||||||||| || || | ||||| || ||||| | ||| || Sbjct 61364 CAACATCAAGAGTAATAGTTTTTCCTGTTAGTGTTTTAACAAATATTTACATTTT 61310 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | |||||| || || ||||| ||||||| ||| || || | Sbjct 63315 CATT-CCACCTCTCAATCTCAACACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAGT 63257 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 63256 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 63197 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| |||||| ||| ||| | | ||| ||| || Sbjct 63196 GTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 63137 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || | ||||||||||| || || | ||||| || ||||| | ||| || Sbjct 63136 CAACATCAAGAGTAATAGTTTTTCCTGTTAGTGTTTTAACAAATATTTACATTTT 63082 >seq507 Length=36014 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 38083 AATCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTG 38141 |||||||| ||||||||||| | ||| || || || ||||| ||||||| ||| || Sbjct 35723 AATCATTAGCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCCTTTTAAATGTTA 35664 Query 38142 TAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 ||||| || | | | | || ||||||| ||||| ||||| || || | || || | Sbjct 35663 TAATCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAA 35604 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261 || | |||| ||||| ||||| |||||| ||| ||| | | ||| ||| Sbjct 35603 TCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGAT 35544 Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || | || || ||||| || |||||||| || ||||| || | ||| Sbjct 35543 GGTTCAACATCAAGAGTGATGGTTTTTCCAGTCAAGGTCTTAACGAAAATTTACAT 35488 >seq114 Length=165420 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 38083 AATCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTG 38141 |||||||| ||||||||||| | ||| || || || ||||| ||||||| ||| || Sbjct 165071 AATCATTAGCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCCTTTTAAATGTTA 165130 Query 38142 TAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 ||||| || | | | | || ||||||| |||||| ||||| || || | || || | Sbjct 165131 TAATCTGAAAGTGTTCTTCCATCTTCTAATTATTTTCCTGCAAAAATGAGTCTTTATTAA 165190 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261 || | |||| ||||| ||||| |||||| ||| ||| | | ||| ||| Sbjct 165191 TCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGAT 165250 Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || | || ||||| || || || || ||||| || ||||| | ||| Sbjct 165251 GGTTCAACATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 165306 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||| || | ||| || ||||| ||||| ||||||| |||||| |||| Sbjct 153368 CATT-CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATATTATAAT 153310 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 153309 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 153250 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||||||||| |||||| ||| ||| | | ||| ||| || Sbjct 153249 GTGGAATTCCTTCTTTGTCTTAAATTTTAGCCTTGACAGCATCTATAGTGTCTGATGGTT 153190 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT-GTTTTA 38323 | || || | || || |||||||| || || ||||| || || || | ||| |||||| Sbjct 153189 CTACATCAAGAGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTACATAGTTTTA 153131 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 38083 AATCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTG 38141 |||||||| ||||||||||| | ||| || || || ||||| ||||||| ||| || Sbjct 164047 AATCATTAGCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCCTTTTAAATGTTA 164106 Query 38142 TAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 ||||| || | | | | || ||||||| ||||| ||||| || || | || || | Sbjct 164107 TAATCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAA 164166 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261 || | |||| ||||| ||||| |||||| ||| ||| | | ||| ||| Sbjct 164167 TCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGAT 164226 Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || | || || ||||| || |||||||| || |||| || | ||| Sbjct 164227 GGTTCAGCATCAAGAGTGATGGTTTT-CCAGTCAAGGTCTTAGCGAAAATTTACAT 164281 >seq287 Length=75303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | |||||| || || ||||| ||||||| ||| || || | Sbjct 759 CATT-CCACCTCTCAATCTCAACACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAGT 701 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 700 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 641 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| |||||| ||| ||| | | ||| ||| || Sbjct 640 GTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 581 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || | ||||||||||| || || | ||||| || ||||| | ||| || Sbjct 580 CAACATCAAGAGTAATAGTTTTTCCTGTTAGTGTTTTAACAAATATTTACATTTT 526 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | |||||| || || ||||| ||||||| ||| || || | Sbjct 2770 CATT-CCACCTCTCAATCTCAACACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAGT 2712 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 2711 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 2652 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| |||||| ||| ||| | | ||| ||| || Sbjct 2651 GTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 2592 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || | ||||||||||| || || | ||||| || ||||| | ||| || Sbjct 2591 CAACATCAAGAGTAATAGTTTTTCCTGTTAGTGTTTTAACAAATATTTACATTTT 2537 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/226 (69%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | |||||| || || ||||| ||||||| ||| || || | Sbjct 1765 CATT-CCACCTCTCAATCTCAACACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAGT 1707 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 1706 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 1647 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| |||||| ||| ||| | | ||| ||| || Sbjct 1646 GTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 1587 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATAT 38311 |||| || | ||||||||||| || || | ||||| || ||||| Sbjct 1586 CAACATCAAGAGTAATAGTTTTTCCTGTTAGTGTTTTAACAAATAT 1541 >seq1719 Length=1442 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019 |||||||||| ||||||||||||||||| |||| ||||||||||| | | | |||||||| Sbjct 552 GTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGTATTTAGC 493 Query 20020 CTTA 20023 |||| Sbjct 492 CTTA 489 >seq1384 Length=2115 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 19954 TTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATA 20013 |||| |||||||||| ||||||||||||||||| |||| ||||||||||| | | | || Sbjct 1781 TTCACGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGTA 1722 Query 20014 TTTAGCCTT 20022 ||||||||| Sbjct 1721 TTTAGCCTT 1713 >seq56 Length=265680 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| ||||| || | ||| || ||||||||||| || |||| ||| || ||||| || Sbjct 113497 ACCTCCTCTTAATCTCAATACTAAATGAAGAGTTGATTCTTTTTAAATGTTATAATCTGA 113438 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | | | | || || | ||| ||||| ||||| || | | || |||||| | || Sbjct 113437 AAGAGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGAGG 113378 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||||| || ||| || ||| ||| | | || ||| | ||| || Sbjct 113377 AATTCCTTCTTTATCTTAAATCTTAGCCTTAACAGCATCAATGGTGTCTGAAGGTTCTAC 113318 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||| ||||| || |||||||||||||| || || || | ||| Sbjct 113317 ATCAAGTGTGATAGTCTTTCCCGTCAAGGTTTTAACAAAAATTTACAT 113270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334937623231526