Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq25 223 4e-53 seq253 221 1e-52 >seq25 Length=399112 Score = 223 bits (246), Expect = 4e-53 Identities = 556/837 (66%), Gaps = 28/837 (3%) Strand=Plus/Minus Query 92746 AAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACATTTT 92805 || || ||||| | |||||||| || || | || ||| ||||||| ||| |||| Sbjct 189059 AAGTCAGCATCCATAGTAAATACTTTATCTTAT---TTTTTACTCATAACTCCAGCTTTT 189003 Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 ||||| || |||||| || |||| |||||||| || || |||| || || ||| || | Sbjct 189002 TGGTAATCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGAGATCATATCC 188943 Query 92866 A-CTAGTGATT-GGATTCTTGGCGTTATAATACTTTTCACCGATC--AACTCGTACAATA 92921 | | | | | |||||||| | |||||| |||| | || || | | | || Sbjct 188942 ATCCATTCAAAAGGATTCTTTGAATTATAAA--TTTTAGGAGCTCCTAATGCAAATATTA 188885 Query 92922 ATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGAC 92981 ||||||| ||||||||||| || || | ||| |||| | |||||||||| | | Sbjct 188884 ATCTATCTGCTACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAATT 188825 Query 92982 GTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGC--------TTCTTT 93033 || |||||||| || | | || ||||| || ||| |||| || | ||| Sbjct 188824 CAACTGGTAGAGCTTCACTGATAAATTCTTTTTCAATTTCAACAGCAGATGAAATAATTT 188765 Query 93034 CAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCA 93093 || || ||| ||| | |||| | ||| | || | || ||||| | | || Sbjct 188764 CATGAATTCG-TTAAT-TACT------TAATTTATTAACTAAATGTTTGTAAAGAAGACA 188713 Query 93094 CGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACC 93153 || ||||| ||||| | |||||| |||| ||| || || ||||| || || | || Sbjct 188712 AGCGAAGTCTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCC 188653 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213 || | || | || ||| |||| ||||||||| | | ||| ||||||||| || || Sbjct 188652 AGGCATCAATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAAAT 188593 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGAT 93273 ||||| || | ||||| || | | | ||| ||||| || |||| | | || Sbjct 188592 GCCTTCAACAGAAGCAAAGGCAATTAATCTTTCAGCAAA---TGAATCATTATTATTAAT 188536 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 |||||| | ||||| ||||| || | ||| ||| | | || ||||| | | Sbjct 188535 CCATTTCATTGCCCACATTGCTTTCTTTTAAATTACAGGCACATTATCTATAGCATGGAG 188476 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 || || | | || | ||| ||| || ||||| || || || ||||| |||| Sbjct 188475 AAGATAGTTTTTTTCATTTTCATCAGTTATATAGGTATCAATCAAAAGTGAATATGTTTC 188416 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 |||||| | ||||||||| || |||| ||||| || |||||||||||||| | | || Sbjct 188415 AGAATGAATATTCTCCATAGCCATTTAAAATCCATAAAAACATCTAGCTTCAGGAACTTG 188356 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 |||||| | | ||| | | | |||||||| ||||||||||| ||||||||| Sbjct 188355 TACTTCTGTACAGAATTATTAAGCCAAGTTTTCATTTACTATACCATCACTTGCTGCAAA 188296 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATC 93570 ||||| | | || ||| ||||| || || ||||| | || || |||||||| Sbjct 188295 GAAAGCAAGGACATACTTAATAAAGTGCTTTTCATCTGAGGTGAGTTTTTCCCAATC 188239 >seq253 Length=82967 Score = 221 bits (244), Expect = 1e-52 Identities = 559/840 (67%), Gaps = 34/840 (4%) Strand=Plus/Minus Query 92746 AAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACATTTT 92805 || || ||||| | |||||||| || || | || ||| |||| || ||| |||| Sbjct 29971 AAGTCAGCATCCATAGTAAATACTTTATCCTAT---TTTTTACTCATGACTCCAGCTTTT 29915 Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 | || || |||||| || |||| || ||||| || || |||| ||||||||| || | Sbjct 29914 TAATAATCTCCAACTCTTCTTTCGAAAAAATTAGTTTTACCTTGTAAAGATATCATATCC 29855 Query 92866 A-CTAGTGATT-GGATTCTTGGCGTTATAATACTTTTCACCGATC--AACTCGTACAATA 92921 | | | | | |||||||| | |||||| |||| | || || | | | || Sbjct 29854 ATCCATTCAAAAGGATTCTTTGAATTATAAA--TTTTAGGAGCTCCTAATGCAAATATTA 29797 Query 92922 ATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGAC 92981 ||||||| || |||||||| || || | ||||| || | ||||||| || | | Sbjct 29796 ATCTATCTGCAACAAATTCAATATATTATTTCATCATATTAGAATTCATACCAATTAATT 29737 Query 92982 GTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGC--------TTCTTT 93033 ||| | || ||| || | | || ||||| || ||| |||| || || ||| Sbjct 29736 CTACTGATAAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGCAGATGAAATTATTT 29677 Query 93034 CAAGATTTCTATTACTCTACT--ATTTGGTGGTTTTTGTACGACATAATTGTACATTAAG 93091 || || |||| ||| | |||| |||| || || | || ||||| | || Sbjct 29676 CATGAATTCT-TTAAT-TACTTAATTTATTGATT--------AAATGTTTGTAAAGTAGA 29627 Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || || ||||| ||||| | |||||| |||| ||| || || ||||| ||||| | Sbjct 29626 CAAGCGAAGTCTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTGAGT 29567 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || | || ||| || | ||| || || | | ||| ||||||||| ||| Sbjct 29566 CCAGGCATCAATGATCTTTTTTTTATCCAGAAAATGGCACAAAATGAACCAGAAAAGAAT 29507 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271 |||||||| || | ||||| || | | | ||| ||||| || |||| | Sbjct 29506 ATACCTTCAACAGAAGCAAAAGCAATTAATCTTTCAGCAAA---TGAATCATTATCATTA 29450 Query 93272 ATCCATTTTAAAGCCCA-ATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 |||||||| | |||||| || | ||| ||| || ||| || | | || ||||| | Sbjct 29449 ATCCATTTCATAGCCCACATTGCCTTCTTTTGTATAACA-GGCACATTATCAATAGCATG 29391 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 || ||| |||| | || | ||| |||||| ||||| || || || ||||| | Sbjct 29390 AAGTAGATAATTTTTTTCATTTTCATCAGTTATGTAAGTATCAATCAATAGTGAATAGGT 29331 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 ||| ||||| | ||||||||| || | | ||||| ||||||||||||||||| | | Sbjct 29330 TTCTGAATGAATATTCTCCATAGCTAACTAAAATCCATAGAAACATCTAGCTTCTGGAAC 29271 Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 | |||||| | ||||| | | | |||||||| || |||||||| ||||| Sbjct 29270 TTAAACTTCTGTACAAAATTATTAAGCCAAGTTTTCATTCACAATACCATCACTAGCTGC 29211 Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATC 93570 ||| || || | || || ||| |||||||| || ||||| |||| || |||||||| Sbjct 29210 AAAGAAGGCAAGTACATACTTAATAAAATGCTTTTCATCTGAGGTAAGTTTTTCCCAATC 29151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556844470057040