Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq114 87.8 1e-12 >seq114 Length=165420 Score = 87.8 bits (96), Expect = 1e-12 Identities = 169/247 (68%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 || |||||||| ||| ||||||||||||| || || || || || | || ||| | Sbjct 139504 AATATGCAAATTTTTGTTAAAACATTAACTGGAAAGACTATCACTCTTGATGTTGAACCA 139563 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTA 21947 |||| || | | || | | ||| |||||| ||||| || || | ||||| Sbjct 139564 TCAGACACCATTGACGCTGTCAAGGCTAAAATTTAAGATAAGGAAGGAATCCCACCTG-- 139621 Query 21948 AACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGAT 22007 | || | ||||| || ||||| || || || |||||||| || ||| | | ||| Sbjct 139622 -ATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGAT 139680 Query 22008 TACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG-ATATTA 22066 || |||||| | |||||||| ||||| ||| | || || | ||| |||| || || | | Sbjct 139681 TATAATATTTAAAAGGAATCAACTCTCCATTTAGTTTTGAGATTAAGAGGTGGAATTTCA 139740 Query 22067 ATAATAA 22073 || |||| Sbjct 139741 ATTATAA 139747 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 21822 TAATAGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAA 21881 ||| |||| ||||| |||| ||| ||||||||||||| || |||||||| || | || Sbjct 143875 TAAAAGTG--AAATGAAAATTTTTGTTAAAACATTAACTGGTAAAACCATCACTCTTGAT 143932 Query 21882 ACGGAAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTA 21941 ||| | |||| || | | | | | || ||||||| || || || || | Sbjct 143933 GTTGAACCATCAGACACTATTGAAGCTGTCGAGGCAAAAATTTAAGACAAGGAAGGAATC 143992 Query 21942 CCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATG 22001 || | | || | ||||| || ||||| || || || |||||||| || ||| | Sbjct 143993 CCACTTGATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTT 144052 Query 22002 GCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 | ||||| || ||| | |||||||| ||||| ||| | || || | ||| |||| ||| Sbjct 144053 TCAGATTATAACATTTAAAAGGAATCAACTCTCCATTTAGTTTTGAGATTAAGAGGTGGA 144112 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||| |||| ||| ||||||||||||| || |||||||| || | || ||| | || Sbjct 153138 ATGTAAATTTTTGTTAAAACATTAACTGGTAAAACCATCACTCTTGATGTAGAACCATCA 153197 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGG---TGTACCTGTAAAC 21950 || || | | | | | ||| |||||| || ||||| || | ||||| | Sbjct 153198 GACACTATAGATGCTGTCAAGGCTAAAATTTAAGACAAAGAAGGAATTCCACCTG---AT 153254 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || | ||||| || ||||| || || || |||||||| || ||| | | ||||| Sbjct 153255 TAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGATTAT 153314 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||| | |||||||| ||||| ||| | || || | ||| |||| ||| Sbjct 153315 AATATTTAAAAGGAATCAACTCTCCATTTAGTTTTGAGATTAAGAGGTGGA 153365 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||||||||| || |||||||| || | || ||| | || Sbjct 163788 ATGCAAATTTTTGTTAAAACATTAACCGGTAAAACCATCACTCTTGATGTTGAACCATCA 163729 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | || | | ||| |||||| || || || || | ||||| | Sbjct 163728 GACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTG---AT 163672 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || | ||||| || ||||| || || || |||||||| || ||| | | ||||| Sbjct 163671 TAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGATTAT 163612 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||| | |||||||| ||||| ||| | || || | ||| |||| ||| Sbjct 163611 AACATTTAAAAGGAATCAACTCTCCATTTAGTTTTGAGATTAAGAGGTGGA 163561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358114560540484