Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq1532 152 1e-32 >seq1532 Length=1741 Score = 152 bits (168), Expect = 1e-32 Identities = 299/431 (69%), Gaps = 12/431 (3%) Strand=Plus/Plus Query 1276 CCAGCCGATGTTCACGTCCTGCAACAGCGGGTTTGCCTGACGGTCGGTCGTCGCGGCCGC 1335 ||||||||||||||||||||||| || ||||| ||| ||||||||| || ||||| Sbjct 1117 CCAGCCGATGTTCACGTCCTGCAGCATGGGGTTGGCCACGCGGTCGGTCTGGGCCGCCGC 1176 Query 1336 CTTCACGCCGTTCCAGCCGATCATGATGCGATCGAGCGCCCCCTGGTTGAGGATCACGTC 1395 | ||||||||||||||||||||| || ||| | || ||| || |||||| | || Sbjct 1177 GCTGGTGCCGTTCCAGCCGATCATGATCCGGTCGCGGCCCTGCTGTTTCAGGATCGCATC 1236 Query 1396 GCGGATGCGCTGCTGGAAGTCGGCGAACTTCGC-CCACATGTCGAGCTTGCGATACGGAA 1454 ||| || || |||||| || | | | || ||| || | | | ||| ||| Sbjct 1237 GCGCATCAGCGTCTGGAATTCCG-GTTTGTGGCGCCAAGCATCCATCAGGGCATA-GGAC 1294 Query 1455 T-CGCCGTGTCGTAGTCGGTCTTCTCGCAGCGGTAGCGGTTGCTGTCGAGCGCCG----T 1509 | |||| ||| | |||||||||| |||| |||||||| ||| | |||| | | Sbjct 1295 TGCGCCCAGTCAAAATCGGTCTTCTTGCAGAGGTAGCGG-CGCTTTTCCGCGCTGTCATT 1353 Query 1510 CGGGTCGATC-GGTTGGCGCGCG-GCCTTCG-TCGTGTCGGTGCGGCTCGCGATCGGGCC 1566 ||||||| || ||||| ||| | ||| || | ||||||||||| | ||||| | || Sbjct 1354 CGGGTCGGTCGGGTTGCGGCGGGTGCCGCCGCTGGTGTCGGTGCGACCGGCGATGGTGCG 1413 Query 1567 GGACACGGACAGGCCGAGCTTTTCGCCTTCGAGCTCGGTCACGGGCAGCACGTTGATGCG 1626 || ||| | | | ||| | ||||| | ||| |||| || | | |||||| Sbjct 1414 GGCGGTGGAAATGGCCAGCACCTGACCTTCCTGATCGATCACCGGAATGATGTTGATCGA 1473 Query 1627 CTTGAGAAACTCGCTCGATTCCTGCATCTTCGTTTCGAGCCGCTGTTGCACGGTCGGCTC 1686 || || || ||| |||||||| ||||| ||||||| ||| | |||| ||| | Sbjct 1474 ATTCAGGAATTCGGACGATTCCTTGATCTTGTCTTCGAGCTTCTGCTCGACGGACGGGGC 1533 Query 1687 GACCGCGAATT 1697 ||||||||||| Sbjct 1534 GACCGCGAATT 1544 Score = 120 bits (132), Expect = 7e-23 Identities = 214/305 (70%), Gaps = 12/305 (4%) Strand=Plus/Plus Query 815 TCTTCGACCACGTAGGCGTCGTTCGACGAT-TCGTAGTTCTCGATGCGGTCGCGTTCCGG 873 || |||| ||| ||||| ||||| |||| | || ||||| |||| |||| | |||||| Sbjct 578 TCCTCGATCACATAGGCCTCGTT-GACGCTCTCATAGTTGGCGATCCGGTTGTATTCCGG 636 Query 874 CACTTCCTTCAGCGTGCGCCGGCGCGCGCCTTCCTGGTAGTAGATCGACAGATTTGACAG 933 | | ||||| ||| ||| ||||| | ||||||||| |||||||| || || ||| Sbjct 637 CTCATCCTTGAGCTGGCGGCGGCGGGTGCCTTCCTGCACATAGATCGAGAGGTTATCCAG 696 Query 934 CTTCGTGACCATCAGCGCGCGCTTCGGGAAGAACGGCACGCGCACGGCCGGCAGATTGCC 993 | ||||| ||| | |||| ||||||||| || ||||||||||| ||||| ||| Sbjct 697 CCGCGTGATCATGATCGCGTTGGCCGGGAAGAAGGGGACGCGCACGGCGGGCAGGCCGCC 756 Query 994 GATGCGCT---TCTGGCTCACGATCAGATC---GGCCGCGAGCCGC-TCG-GTCGGCGCC 1045 ||| | | || || || ||| | || ||| ||| | || ||| |||||||| Sbjct 757 GATCTGTTTTGTCGAGCGCAGGATGCGGTCGGTGGCTTCGACCTGCATCGCCTCGGCGCC 816 Query 1046 TGCGTCGCGTTGACGATCGGGAAATACTTGTCGTGCAGCAGCTCGCGGCCGCAGATCACG 1105 ||||| | | |||| |||||| ||||| | | ||| || ||||| |||||| Sbjct 817 --GGTCGCCTGGGCGATGTTGAAATATTTGTCATCGACCAGATCATGGCCGACGATCACC 874 Query 1106 ACGAG 1110 || || Sbjct 875 ACCAG 879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117283132547504