Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq1259 158 4e-34 >seq1259 Length=2529 Score = 158 bits (174), Expect = 4e-34 Identities = 299/436 (69%), Gaps = 17/436 (4%) Strand=Plus/Plus Query 42706 GGTCTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGT 42765 ||| |||||||| | | | |||| || | ||| ||||| ||| || |||||| Sbjct 1697 GGTTTCGCCGCCAACGGTGGGCACGCCCACGCAATTGCCATAGCCGCCGATGCCCGCAAC 1756 Query 42766 GACGCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTC 42825 ||||| ||||| | || | | | ||||| |||| ||| |||||||| |||| Sbjct 1757 CACGCCCTGCACCAGATGCTTCATCTTGGGGTGATCGGGGCGGCCAAAGCGCAGCGCGTT 1816 Query 42826 CATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACC 42885 |||| || |||||||| |||||||||| || | |||||| | ||||||||| || || Sbjct 1817 CATGTTGGCCACCGGGCGCGCGCCCATGGTGAACACGTCGCGCAAGATGCCGCCAACGCC 1876 Query 42886 CGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAA 42945 ||||| |||||||| |||| ||||| |||||||||||||||| ||| |||||| Sbjct 1877 GGTCGCGGCGCCCTGATAGGGTTCGATATACGAGGGGTGGTTGTGCGATTCCATCTTGAA 1936 Query 42946 CGTGACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCCCGACCAT 43005 || | ||| || || || | |||||| ||||| ||||| | || ||| || Sbjct 1937 GATGGCGGCCTGACCATCACCAATGTCGATCACGCCGGCGTTTTCGCCGGGGCCGCAGAT 1996 Query 43006 GAGGCGCTCGCGCATCTCGTCCGAGACCTTCTGCCCGAACCTCTTGAGGTAGAGCTTGCT 43065 || | | | | |||| || || | | | || |||| ||| ||| Sbjct 1997 GA--CCCAAG-GTGCCTCG---------GTCGGC---AGCTTTTTCAGGTGGAGGCGGCT 2041 Query 43066 CGACTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCTCGCCCGAGGT 43125 ||||||||| ||||| |||||||||||||| ||||| | || |||| || | | |||| Sbjct 2042 CGACTTGTACGAGCAATGCTCCGACCACATGACCGAAAAAATGCCCAGTTC-CACAAGGT 2100 Query 43126 GGGGC-GGCGGCCGAG 43140 ||| |||||||| Sbjct 2101 TCGGCTCACGGCCGAG 2116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148242270040604