Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq454 104 6e-17 seq128 89.7 1e-12 seq337 87.8 4e-12 seq287 87.8 4e-12 seq112 86.0 1e-11 >seq454 Length=44262 Score = 104 bits (114), Expect = 6e-17 Identities = 147/204 (72%), Gaps = 7/204 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||| || |||||||| | || || | |||||||||||||| ||||||||| || Sbjct 41529 TTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCGTCTTCTAATTATTTTCCTGCAAA 41588 Query 288342 GATCAGACGCTGTTGAGAATC---TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| || | |||| |||| |||||||||||| || || | |||||| ||||| || Sbjct 41589 GATAAGTCTTTGTT---AATCGGGTGGGATTCCTTCCTTGTCTTAGATTTTAGCTTTGAC 41645 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || | || | ||| || || || || || ||||| || || || ||||| Sbjct 41646 AGCATCAATTGTGTCAGATGGTTCAACATCAAGAGTAATTGTCTTTCCTGTGAGTGTCTT 41705 Query 288459 GACGAATATCTGCATTATGTTATT 288482 ||||| || | |||| | ||||| Sbjct 41706 TACGAAAATTTACATTGT-TTATT 41728 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||| || |||||||| | || || | |||||||||||||| ||||||||| || Sbjct 41073 TTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCGTCTTCTAATTATTTTCCTGCAAA 41132 Query 288342 GATCAGACGCTGTTGAGAATC---TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| || | | || |||| |||||||||||| || || | |||||| ||||| || Sbjct 41133 GATAAGTCTTTATT---AATCGGGTGGGATTCCTTCCTTGTCTTAGATTTTGGCTTTGAC 41189 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || | || | ||| || || || || || ||||| || || || ||||| Sbjct 41190 AGCATCAATTGTGTCAGATGGTTCAACATCAAGAGTAATTGTCTTTCCTGTGAGTGTCTT 41249 Query 288459 GACGAATATCTGCATT 288474 ||| || || | |||| Sbjct 41250 GACAAAGATTTACATT 41265 Score = 84.2 bits (92), Expect = 5e-11 Identities = 137/196 (70%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||| ||| ||||| || | || || | || |||||||||| |||||| ||||| Sbjct 41301 TTCCTTTTAGATGTTATAATCTGAAAGTGTTCTACCATCTTCTAATTATTTTCCAGCGAA 41360 Query 288342 GATCAGACGCTGTTGAGAATC---TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| || | | || |||| |||||||||||| || || | |||||| ||||| || Sbjct 41361 GATAAGTCTTTATT---AATCGGGTGGGATTCCTTCCTTGTCTTAGATTTTAGCTTTGAC 41417 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || | || | ||| || || || || || || || || || || ||||| Sbjct 41418 AGCATCAATTGTGTCAGATGGTTCAACATCAAGAGTAATAGTTTTTCCTGTGAGTGTCTT 41477 Query 288459 GACGAATATCTGCATT 288474 ||| || || | |||| Sbjct 41478 GACAAAGATTTACATT 41493 >seq128 Length=150569 Score = 89.7 bits (98), Expect = 1e-12 Identities = 172/252 (68%), Gaps = 5/252 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | ||| | ||| | || |||||||| |||||||| || | Sbjct 58062 CCACCTCTTAGTCTTAATACTAAATGGAGAGTTGATTCTTTTTAAATATTATAATCTGAA 58003 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| ||||| | ||| |||||||| || |||| | | || | | ||| Sbjct 58002 AGAGTTCTTCCATCTTCGAGTTGCTTTCCTGCAAAAATCAATCTTTATTAATCAGGTGGA 57943 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||||||||| | || || || || || || || | ||| | ||||| Sbjct 57942 ATTCCTTCTTTATCTTAAATCTTAGCCTTAACAGCATCAATTGTATCTGAAGGCTCTACA 57883 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTCTAA 288486 || || ||||| ||||| || ||||| || || || || || | | || ||||| || Sbjct 57882 TCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTAACAAAAATTTAC---ATATTATTTTA- 57827 Query 288487 TATTTTTAATAA 288498 | ||||||||| Sbjct 57826 -AATTTTAATAA 57816 >seq337 Length=64228 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||| || |||||||| | || || | ||| |||||||||| |||||||| || Sbjct 63504 TTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 63445 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | | || | | |||||||||||| || || | ||||| || || || Sbjct 63444 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGC 63385 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || | ||| || || || ||||| || || || |||| |||||| || Sbjct 63384 GTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAAC 63325 Query 288462 GAATATCTGCATT 288474 ||| || | |||| Sbjct 63324 GAAAATTTACATT 63312 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||| || |||||||| | || || | ||| |||||||||| |||||||| || Sbjct 61733 TTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 61674 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | | || | | |||||||||||| || || | ||||| || || || Sbjct 61673 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGC 61614 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCG-TCTTCCCGGTCAGAGTCTTGA 288460 || |||| || | ||| || || || ||||| | | |||| ||||| |||||| | Sbjct 61613 GTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTTCCAGGTCAAAGTCTTAA 61554 Query 288461 CGAATATCTGCATT 288474 |||| || | |||| Sbjct 61553 CGAAAATTTACATT 61540 >seq287 Length=75303 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||| || |||||||| | || || | ||| |||||||||| |||||||| || Sbjct 948 TTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 889 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | | || | | |||||||||||| || || | ||||| || || || Sbjct 888 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGC 829 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || | ||| || || || ||||| || || || |||| |||||| || Sbjct 828 GTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAAC 769 Query 288462 GAATATCTGCATT 288474 ||| || | |||| Sbjct 768 GAAAATTTACATT 756 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||| || |||||||| | || || | ||| |||||||||| |||||||| || Sbjct 1953 TTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 1894 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | | || | | |||||||||||| || || | ||||| || || || Sbjct 1893 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGC 1834 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || | ||| || || || ||||| || || || |||| |||||| || Sbjct 1833 GTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAAC 1774 Query 288462 GAATATCTGCATT 288474 ||| || | |||| Sbjct 1773 GAA-ATTTACATT 1762 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||| || |||||||| | || || | ||| |||||||||| |||||||| || Sbjct 2958 TTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 2899 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | | || | | |||||||||||| || || | ||||| || || || Sbjct 2898 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGC 2839 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || | ||| || || || ||||| || || || |||| |||||| || Sbjct 2838 GTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGT-TTTCCAGTCAAAGTCTTAAC 2780 Query 288462 GAATATCTGCATT 288474 ||| || | |||| Sbjct 2779 GAAAATTTACATT 2767 >seq112 Length=167324 Score = 86.0 bits (94), Expect = 1e-11 Identities = 174/255 (68%), Gaps = 10/255 (4%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | |||||| | ||| | ||| | || |||||||| ||||||||| || | Sbjct 45498 CCTCCTCTGAGTCTCAATACTAAATGGAGAGTTGATTCTTTTTAGATATTATAATCTGAA 45439 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || | ||| || || ||||| ||||| || || || | | | || |||| || Sbjct 45438 AGAGTTCTTCCATCCTCCAATTGCTTTCCAGCAAAAATTAATCTTTATT---AATCGGGA 45382 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||| || |||| ||| || || || || || |||| ||| | || Sbjct 45381 GGGATTCCTTCCTTGTCCTAGATCTTTGCCTTAACAGCATCGATAGTATCAGATGGCTCA 45322 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483 || || || ||||| ||||| || || || ||||| || || || | | || ||||| Sbjct 45321 ACATCAAGTGTGATGGTCTTACCCGTAAGGGTCTTAACAAAAATTTAC---ATATTATTT 45265 Query 288484 TAATATTTTTAATAA 288498 ||| |||||||| || Sbjct 45264 TAA-ATTTTTAAAAA 45251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179618941800588