Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq56 100 3e-16 seq128 91.5 1e-13 seq114 84.2 2e-11 >seq56 Length=265680 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||||| || |||||||||| |||||| ||||||| | || | Sbjct 113487 AATCTCAATACTAAATGAAGAGTTGATTCTTTTTAAATGTTATAATCTGAAAGAGTTCTT 113428 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | |||||||| ||||| || ||| |||| | | | || || ||||||||||||||| Sbjct 113427 CCATCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGAGGAATTCCTTCT 113368 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || |||| || || ||| ||| | || | || || | || || || | || Sbjct 113367 TTATCTTAAATCTTAGCCTTAACAGCATCAATGGTGTCTGAAGGTTCTACATCAAGTGTG 113308 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||||| || ||||| ||||| || ||||||| ||| Sbjct 113307 ATAGTCTTTCCCGTCAAGGTTTTAACAAAAATTTACAT 113270 >seq128 Length=150569 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || |||||||||| ||| || ||||||| | || | | ||||| Sbjct 58044 ACTAAATGGAGAGTTGATTCTTTTTAAATATTATAATCTGAAAGAGTTCTTCCATCTTCG 57985 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || ||||| || ||| |||| | | | | || || |||||||||||||| |||| Sbjct 57984 AGTTGCTTTCCTGCAAAAATCAATCTTTATTAATCAGGTGGAATTCCTTCTTTATCTTAA 57925 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || || ||| ||| | || | |||||| | || || || | ||| | |||||| Sbjct 57924 ATCTTAGCCTTAACAGCATCAATTGTATCTGAAGGCTCTACATCAAGAGTGATGGTCTTT 57865 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCATTTTA 64447 || |||| ||||| || ||||||| ||| ||| Sbjct 57864 CCCGTCAGGGTTTTAACAAAAATTTACATATTA 57832 >seq114 Length=165420 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/225 (68%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||| | || ||||| |||| |||||| ||||||| | || | Sbjct 163571 AATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAAAGTGTTCTT 163630 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | | ||| || ||| ||||||| | | | || || || |||||||| Sbjct 163631 CCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCC 163690 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || |||| ||||| ||| ||| | || | || || | || || || | ||| Sbjct 163691 TTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTG 163750 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT--TTTAA 64448 | ||| || ||||| || ||||| || ||||||||||| ||||| Sbjct 163751 ATGGTTTTACCGGTTAATGTTTTAACAAAAATTTGCATAGTTTAA 163795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499630147916240