Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq2232 179 5e-40 >seq2232 Length=1021 Score = 179 bits (198), Expect = 5e-40 Identities = 338/488 (69%), Gaps = 17/488 (3%) Strand=Plus/Minus Query 41617 GTGGGCGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGATCGTGATCCAAGC 41676 |||||| |||| || ||| | | |||| || ||||||| || || || || || Sbjct 1010 GTGGGCTCAGGCCTACGCCCTGGAGAACCGCAAGGTGATGATGGAGGCGGTCATTGCCGC 951 Query 41677 GCTGCGTCGTC--ATCTGCCGGC--CTTCGAGCTGACGGAAGAGGCGGTGAACTGCCACC 41732 ||||| |||| ||| ||| | |||| | | || | || || | |||||||||| Sbjct 950 CCTGCGCCGTCGCATCC-CCGTCGACTTCACGATCACCCAGGAAGCCATCAACTGCCACC 892 Query 41733 ACAACTATTGTGAGCA--GGAGAACCACTTCGGGCGCAACGTGTGGGTCACGCGCAAGGG 41790 ||||||| |||| ||| |||||||| || || |||||| | ||||| || |||||||| Sbjct 891 ACAACTA-TGTG-GCACGCGAGAACCATTTTGGCCGCAACCTCTGGGTGACCCGCAAGGG 834 Query 41791 TGCGGTTCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTACGAAGTC 41850 || |||| || || || | ||| || || ||||| || || ||||||| | || Sbjct 833 CGCTATTCGGGCCCGCGATGGCGACCTTGGCATCATCCCTGGCAGCATGGGTCAGCGCTC 774 Query 41851 GTACATCGTCAAGGGCAAGGGCAATCCGCATTCGTACTGCTCGTGCAGTCACGGGGCAGG 41910 |||||||| ||||| ||||| | | | |||||| ||||| || ||||| || Sbjct 773 CTACATCGTGCGCGGCAAAGGCAACCAGGACAGCTACTGCAGTTGCAGCCATGGGGCCGG 714 Query 41911 ACGCCGTATGTCGCGCACCG----AGGCCGTCAAGCGATTCACCGTCGAAGACCTCGTGC 41966 ||| ||||| ||||| | | |||| |||| |||| | | || | ||| Sbjct 713 CCGCGCCATGTCACGCACAGCAGCACGCCG-CAAG---TTCAGCCTGACCGAGTTGGTGG 658 Query 41967 AGCAGACGCAGGGTGTTGAATGCCCGAAGACCAAGGAAGTGCTGGATGAAATCCCGGCCG 42026 |||||| || || || ||||||| ||| | | | |||||||| ||||| |||| || Sbjct 657 CGCAGACCCAAGGGGTCGAATGCCGCAAGGACGATGCGGTGCTGGACGAAATTCCGGGCG 598 Query 42027 CGTACAAGGACATCGATCAGGTGATGCTTGACCAAAGCGATCTGGTGGAAGTCGTTCATA 42086 | ||||||||||| |||||||| ||| || || ||||||| | || || ||||| | Sbjct 597 CTTACAAGGACATTGATCAGGTCATGACTGCTCAGTCCGATCTGATTGAGGTTGTTCACA 538 Query 42087 CGCTGAAG 42094 | ||||| Sbjct 537 CCTTGAAG 530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739866302784400