Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq56 107 5e-18 seq114 96.9 8e-15 seq112 93.3 1e-13 seq128 89.7 1e-12 seq337 84.2 5e-11 seq287 84.2 5e-11 >seq56 Length=265680 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | || ||||| || || |||| | ||| || || | | ||| ||||| Sbjct 113485 TCTCAATACTAAATGAAGAGTTGATTCTTTTTAAATGTTATAATCTGAAAGAGTTCTTCC 113426 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| || |||||||| || || || | | | || || ||| |||||||||| Sbjct 113425 ATCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGAGGAATTCCTTCTTT 113366 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || | |||||| ||| || | || | |||||||| | ||||||||| | ||||| Sbjct 113365 ATCTTAAATCTTAGCCTTAACAGCATCAATGGTGTCTGAAGGTTCTACATCAAGTGTGAT 113306 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTT 199625 ||||| ||||| | ||||| |||||||||| Sbjct 113305 AGTCTTTCCCGTCAAGGTTTTAACAAAAATTT 113274 >seq114 Length=165420 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||||||||| || ||||||| | ||| || || | | || ||||| Sbjct 141180 TCTCAAGACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAAAGTGTTCTTCC 141121 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | | |||||| || || ||||| | | | || || ||||||||| Sbjct 141120 ATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGAATTCCTTCCTT 141061 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || | ||| || ||| || | || | ||||||| || ||| ||||| | ||||| Sbjct 141060 GTCTTAAATTTTAGCCTTGACAGCATCAATAGTGTCTGATGGTTCAACATCAAGAGTGAT 141001 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || | ||||| ||||||||||| Sbjct 141000 TGTTTTACCTGTTAATGTTTTAACAAAAATTTG 140968 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | |||||||| || ||||||| | || || || | | || ||||| Sbjct 153353 TCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATATTATAATCTGAAAGTGTTCTTCC 153294 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | | |||||| || || ||||| | | | || || |||||||||| Sbjct 153293 ATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGAATTCCTTCTTT 153234 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || | ||| || ||| || | || | ||||||| || ||||||||| | ||||| Sbjct 153233 GTCTTAAATTTTAGCCTTGACAGCATCTATAGTGTCTGATGGTTCTACATCAAGAGTGAT 153174 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTT 199625 || ||||| || | ||||| |||||||||| Sbjct 153173 GGTTTTACCAGTTAATGTTTTAACAAAAATTT 153142 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | |||||||| || ||||||| | ||| || || | | || ||||| Sbjct 144100 TCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAAAGTGTTCTTCC 144041 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | | |||||| || || ||||| | | | || | |||||||| Sbjct 144040 ATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAAGTGGGATTCCTTCCTT 143981 Query 199534 CTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || | ||| |||||| || || | ||| | ||||||| || ||| ||||| | |||| Sbjct 143980 GTCTTAAAT-TTTTGCCTCGACAGCTTCAATAGTGTCTGATGGTTCAACATCAAGAGTGA 143922 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTT 199625 | || ||||| || | ||||| |||||||||| Sbjct 143921 TGGTTTTACCAGTTAATGTTTTAACAAAAATTT 143889 >seq112 Length=167324 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||||| || | |||||||| || || |||| || || || || | | ||| ||| Sbjct 45489 AGTCTCAATACTAAATGGAGAGTTGATTCTTTTTAGATATTATAATCTGAAAGAGTTCTT 45430 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| |||| |||||||| || || || | | | | || ||| |||||||| Sbjct 45429 CCATCCTCCAATTGCTTTCCAGCAAAAATTAATCTTTATTAATCGGGAGGGATTCCTTCC 45370 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 |||| |||||| ||| || | |||| || || | || || ||||| | ||| Sbjct 45369 TTGTCCTAGATCTTTGCCTTAACAGCATCGATAGTATCAGATGGCTCAACATCAAGTGTG 45310 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTT 199625 || ||||||||||| || || || |||||||||| Sbjct 45309 ATGGTCTTACCCGTAAGGGTCTTAACAAAAATTT 45276 >seq128 Length=150569 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 |||||||| || || |||| | || || || | | ||| ||||||||||| || ||| Sbjct 58038 TGGAGAGTTGATTCTTTTTAAATATTATAATCTGAAAGAGTTCTTCCATCTTCGAGTTGC 57979 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| || || || | | | | || || |||||||||| || | |||||| Sbjct 57978 TTTCCTGCAAAAATCAATCTTTATTAATCAGGTGGAATTCCTTCTTTATCTTAAATCTTA 57919 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || | || | || |||| | |||||||| | ||||| ||||| ||||| Sbjct 57918 GCCTTAACAGCATCAATTGTATCTGAAGGCTCTACATCAAGAGTGATGGTCTTTCCCGTC 57859 Query 199607 AGAGTTTTCACAAAAATTT 199625 || ||||| |||||||||| Sbjct 57858 AGGGTTTTAACAAAAATTT 57840 >seq337 Length=64228 Score = 84.2 bits (92), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||||||||| || ||||||| | ||| ||||| | | || ||||| Sbjct 61528 TCTCAACACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCC 61469 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | | |||||| || || ||||| | | | || || |||||||| Sbjct 61468 ATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 61409 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || | ||| || ||| || | || | ||||||| || ||| ||||| | || || Sbjct 61408 GTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTAAT 61349 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || ||||| ||||| ||| |||||||| Sbjct 61348 AGTTTTTCCTGTTAGTGTTTTAACAAATATT---TACATTTT 61310 Score = 84.2 bits (92), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||||||||| || ||||||| | ||| ||||| | | || ||||| Sbjct 63300 TCTCAACACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCC 63241 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | | |||||| || || ||||| | | | || || |||||||| Sbjct 63240 ATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 63181 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || | ||| || ||| || | || | ||||||| || ||| ||||| | || || Sbjct 63180 GTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTAAT 63121 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || ||||| ||||| ||| |||||||| Sbjct 63120 AGTTTTTCCTGTTAGTGTTTTAACAAATATT---TACATTTT 63082 >seq287 Length=75303 Score = 84.2 bits (92), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||||||||| || ||||||| | ||| ||||| | | || ||||| Sbjct 744 TCTCAACACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCC 685 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | | |||||| || || ||||| | | | || || |||||||| Sbjct 684 ATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 625 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || | ||| || ||| || | || | ||||||| || ||| ||||| | || || Sbjct 624 GTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTAAT 565 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || ||||| ||||| ||| |||||||| Sbjct 564 AGTTTTTCCTGTTAGTGTTTTAACAAATATT---TACATTTT 526 Score = 84.2 bits (92), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||||||||| || ||||||| | ||| ||||| | | || ||||| Sbjct 2755 TCTCAACACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCC 2696 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | | |||||| || || ||||| | | | || || |||||||| Sbjct 2695 ATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 2636 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || | ||| || ||| || | || | ||||||| || ||| ||||| | || || Sbjct 2635 GTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTAAT 2576 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || ||||| ||||| ||| |||||||| Sbjct 2575 AGTTTTTCCTGTTAGTGTTTTAACAAATATT---TACATTTT 2537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178886163827182