Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq25 87.8 2e-12 >seq25 Length=399112 Score = 87.8 bits (96), Expect = 2e-12 Identities = 199/296 (67%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || ||||| ||||||| ||||| | ||||||||| ||| || || ||||| | Sbjct 188699 TGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCAGGCATCAATGAT 188640 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 | || || | |||| | ||||| || ||||| || || ||||| || || || ||| | Sbjct 188639 CTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAAATGCCTTCAACAGAA 188580 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCC 117465 ||||| |||| | | || || || || | || | | || ||||||||||||| Sbjct 188579 GCAAAGGCAATTAATCTTTCAGCAAATGAATCA---TTATTATTAATCCATTTCATTGCC 188523 Query 117466 CATTTCGCCTTCTTCTCAAT-ACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTT 117524 || | || ||||| | ||| ||| || ||| | | || || | | | | || || Sbjct 188522 CACATTGCTTTCTTTTAAATTACA-GGCACATTATCTATAGCATGGAGAAGATAGTTTTT 188464 Query 117525 TTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAA 117580 |||| | |||| | || || | |||||||| |||||||||||| ||||| Sbjct 188463 TTCATTTTCATCAGTTATATAGGTATCAATCAAAAGTGAATATGTTTCAGAATGAA 188408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589963498813040