Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq1532 111 4e-20 >seq1532 Length=1741 Score = 111 bits (122), Expect = 4e-20 Identities = 113/145 (78%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 30343 CCAGCCGATGTTCACGTCCTGCAACAGCGGGTTCGCCGCGAGATCGGTGTCGGCTGCCGC 30402 ||||||||||||||||||||||| || ||||| ||| || | ||||| | ||| ||||| Sbjct 1117 CCAGCCGATGTTCACGTCCTGCAGCATGGGGTTGGCCACGCGGTCGGTCTGGGCCGCCGC 1176 Query 30403 GCGCACGCCATTCCAGCCGATCATGATCCGATCGAGCGCCGCGC-GTCGAATGATCGCGT 30461 || ||| |||||||||||||||||||| ||| | ||| || || | |||||| | Sbjct 1177 GCTGGTGCCGTTCCAGCCGATCATGATCCGGTCGCG-GCCCTGCTGTTTCAGGATCGCAT 1235 Query 30462 CGCGCAGACGAGCCTGGAAGTCCGG 30486 |||||| | | |||||| ||||| Sbjct 1236 CGCGCATCAGCGTCTGGAATTCCGG 1260 Score = 86.0 bits (94), Expect = 1e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 29898 CGAATTCCTCGATCACGTACGCATCGTTCGAGCTTTCGAAGTTCTCGATGCGATCGCGCT 29957 || ||||||||||||| || || ||||| ||| || |||| |||| || | | | Sbjct 573 CGTATTCCTCGATCACATAGGCCTCGTTGACGCTCTCATAGTTGGCGATCCGGTTGTATT 632 Query 29958 TCGGGTTGTCGATGAGCGCGCGACGGCGCGCACCGATTTGCCAGTACAGCGACAGGTTGT 30017 ||| | || ||||| ||| ||||| | || ||| || | ||| ||||| | Sbjct 633 CCGGCTCATCCTTGAGCTGGCGGCGGCGGGTGCCTTCCTGCACATAGATCGAGAGGTTAT 692 Query 30018 CCAGGCGCGTGATCATCAGCGCGCGCGGGGGGAAGTACGGCACGCGCACGGCCGGCAGAT 30077 |||| ||||||||||| | |||| | |||||| | || ||||||||||| ||||| Sbjct 693 CCAGCCGCGTGATCATGATCGCGTTGGCCGGGAAGAAGGGGACGCGCACGGCGGGCAGGC 752 Query 30078 TGCCGAT 30084 |||||| Sbjct 753 CGCCGAT 759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119030283872696