Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq1730 107 4e-19 >seq1730 Length=1430 Score = 107 bits (118), Expect = 4e-19 Identities = 443/680 (65%), Gaps = 33/680 (5%) Strand=Plus/Plus Query 22743 GCCATCATTTCG-GTCGGCGCTTGGGCCTTGTTGACGAGCGGGAAATACTTGTCGTGCAA 22801 |||||||||||| | | || ||| || ||||| |||||||||||||||||| |||| Sbjct 378 GCCATCATTTCGAGGCTGC-CTTCGGTGCGGTTGATGAGCGGGAAATACTTGTCATGCAC 436 Query 22802 CAGGCCGCGACCGCAC-ATCACGACGAGAGCCGTGTCGTCTTGGTGCCACGGGTCGATCA 22860 ||| ||| || ||| |||||||| || | | || || || ||| ||| || Sbjct 437 CAGCTTGCGGCC-CACGATCACGACAAGGTCGGGATCTTCCTGCACCCAT---TCGGGCA 492 Query 22861 TGCTCGCGACCAGATCGGCG------ACGAGCGCATCGAGGTTCGCGTAATCGCCGGCCG 22914 || || || | |||| || || | ||||| | | || ||||| |||| Sbjct 493 TGAGCGATTCC---TTGGCGTCCCACACCAGAGAGTCGAGACTGTCATAGTCGCCCGCCG 549 Query 22915 CGCCGACGACGATCTTGCCGGCCGTCTTCGCGCCTTCG------TCCATCACGCGTTGCG 22968 |||| | || |||||| | | ||| |||| ||| ||||| | |||| | Sbjct 550 CGCCATAGGTGACCTTGCCCGTCACCTTGCCGCCCTCGACCTCATCCATGAGCCGTTCGG 609 Query 22969 GGGCTTGGTCGCGCATGCGTTGCAACCAGCCCTTATTGACGTCCTGCAACAGCGGGTTAG 23028 |||||| |||||| || || | |||||| ||||| ||||| | |||||| || | Sbjct 610 GGGCTTCGTCGCGGATCGCCTGAAGCCAGCCACGATTGAAATCCTGAAGCAGCGGATTGG 669 Query 23029 CTGCACGGTCGGACGTTGCCGCACGCGAACGGCCGTTGAAACCGATCGCGA-TGCGGTCG 23087 | | |||| || || ||| ||| ||||| || | ||| | || ||| Sbjct 670 CGGTGCGGTTGGTGGTCTTGGCATAGTGGGTGCCATTGAAGCCCA-CGCAAATGGTGTCC 728 Query 23088 AGCGCTTGACGGCGCACGATCACGTCGCGAATGCGGGTCTGGAAGTCGGGAAACTTCGCC 23147 ||||| |||||| || | | || || ||||| |||||||||||||| |||| |||| Sbjct 729 AGCGCCTGACGGATCAGGCAGGCATCACGGATGCGCGTCTGGAAGTCGGGGAACTGCGCC 788 Query 23148 CACGCGTCGAGCAGCGCATACGTGATGTGC-GAGTCGAAATTCGTTTGCGTGCAGTTGTA 23206 ||| ||| ||| || || | | | | | |||||| || | || |||| | ||| Sbjct 789 CACATGTCCAGCTTGGCGTA-GCGCAGAACGGTGTCGAAGTTGTTCTGGTTGCATTCGTA 847 Query 23207 ACCGTTCTCGTCGAGGTCGGTCACATC--AGCCGTTGCG-CGATC-CTTCTGCGTCGTGT 23262 |||| | | || || |||| || |||| ||| ||| | ||| | |||| Sbjct 848 ACCGAACGCATCCAGCCCGGTGGGGTCGGTGCCGACGCGTTCATCGCCGCTG-GCGGTGT 906 Query 23263 CGGTCGTGCTCGCGATCGGCGAGCCGACGCCGAGGCCGAGCTT-TGCGCCTTCCTTGTCG 23321 |||| |||| |||| | ||| ||| ||||||| || || ||||| | || Sbjct 907 CGGTGTTGCTGCCGATGGAACCGCCCACGGTCAGGCCGATTTTCTGGCCCTTCAGTTGCG 966 Query 23322 GTCACGCCGATAACGTTGATGCGTTTCAGAAAGTCGCTCGATTCCTGAATGCGGGTTTCG 23381 | || || || ||||||||| | || ||| || | | |||||| ||||| ||| | Sbjct 967 G-AACCGGGACAATGTTGATGCGGCTGAGGAAGGCGATGGCTTCCTGCATGCGCGTTACC 1025 Query 23382 AGCTTTTGTTGCACGCTCGG 23401 ||| | || || ||||| || Sbjct 1026 AGCGTCTGCTGAACGCTGGG 1045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103289922391708